F22814

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22814

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22814

Determination of introduced cDNA(s)

  • RAFL05-09-B06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-09-B06 - Resource: pda01011

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-09-B06 - full reading
    ACAGTGCTCT CTTTTCCACT ATCGCCATGA TTGCTCAAAC GTGAATAGAA 
    TGATCTGATC CATAATCTAA AAAATTGAGC TTTCATCAGT AACCGAAGCA
    ATGGCACGGA GGTCTGGAAA TTGCATGAGA TGTCTAGTGA TATTCTCGGT
    GGTTTCAGCA TTATTAGTGT GTGGACCTGC TCTTTACTGG AAATTGAATA
    AGGGTTTCGT TGGATCTGCT CGTAGCACCA ACTCCATTTG TCCTCCTTGT
    GTCTGCGATT TTCCTCCTCC TTTGTCTCTC CTCCAGATTG CTCCCGGGCT
    TGCAAACCTC TCTATTACAG GTTGTGGCAG CGATGATCCA GAGCTCAAAG
    AGGAGATGGA GAAGCCGTTT GTGGATCTTC TCACAGAAGA GCTGAAGCTT
    CAAGAAGCAG TGGCAGACGA GCATAGTCGT CATATGAATG TTACACTTGC
    CGAAGCTAAA AGAGTTGCTT CACAGTACCA AAAGGAGGCT GAGAAGTGTA
    ACGCTGCCAC TGAAATTTGC GAATCAGCTA GAGAGAGAGC TCAAGCATTG
    TTGCTCAAAG AGCGGAAGAT CACTTTTTTG TGGGAGCGCA GAGCTCGGCA
    ATTAGGTTGG GAAGGTGAGT AAGTAATTCA CTGTTTAGTG ACTTCTTCAC
    AGTCTACTCT GACGAGTTTC TCAATGGAAG CAAACTAGAT TTTCTCTTCC
    GTATACAACT CGTGAGAACA TGGGAATCGC TTAATTCGCA AGGCAATGTT
    TTTGTCTCAC ATGTTCTCTA TATATGTAGT TCTTTTTTGT TTTGCTCTTG
    GCTCTAGACA CTGCTAAAGA AAGGGTTGGC CTTGTATTGA CTTTTTTCTT
    CAGATATATA TTTGTCAGTC ACACTGGACA AAGTAAAAAA AAAAAAAAAA

    Gene models with high sequence identity

    1. AT2G24290.1 [+] show detail - Protein of unknown function (DUF1068)
      E-value: 0; Score: 99.89

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPfam Protein of unknown function DUF1068 3.2e-44

    See the detailed result >

    AT2G24290.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF1068)
    Computational Description
    Protein of unknown function (DUF1068); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1068 (InterPro:IPR010471); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1068) (TAIR:AT4G30996.1); Has 111 Blast hits to 111 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 110; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR