F22816

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22816

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22816

Determination of introduced cDNA(s)

  • RAFL04-19-J16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-19-J16 - Resource: pda00663

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-19-J16 - full reading 
    AAACGTCGCG ACGGAGAGAG AGCGAGAGAG ACGATGGAGG AAGAGGAGCA 
    CGAGGTTTAC GGTGGTGAAA TTCCAGACGT CGGAGAGATG GATGGAGATA 
    TGGAGGCTCT CAACCCCGAT TTGGATATGG CTGCTGCTGA TGATGATGCG 
    GTTAAGGAGT TGGATGAAAT GAAGAAACGA TTGAAAGAGA TGGAGGACGA 
    AGCTGCTGCT CTGCGTGAGA TGCAGGCTAA GGTCGAGAAG GAAATGGGAG 
    CTCAAGATCC TGCTAGTATT GCAGCGAATC AAGCAGGCAA GGAGGAGGTT 
    GATGCTCGAT CAGTTTTTGT TGGCAATGTT GATTACGCTT GCACACCTGA 
    AGAAGTTCAG CAGCATTTCC AAACATGCGG CACTGTCCAT CGGGTGACCA 
    TTCTGACAGA CAAATTCGGG CAGCCAAAGG GATTTGCATA TGTAGAATTC 
    GTCGAAGTGG AAGCTGTTCA AGAGGCTCTA CAACTGAATG AATCAGAGCT 
    ACATGGTCGT CAATTAAAGG TCTTGCAGAA GAGAACAAAC GTTCCTGGAT 
    TGAAACAGTT CCGTGGTAGA CGATTCAATC CATACATGGG TTACCGGTTC 
    CGCAGACCTT TCATGTCTCC TTATATGTAT TCCCCATATG GATACGGAAA 
    AGCTCCTAGG TTTAGAAGGC CTATGCGTTA CATGCCGTAC CAATAAAACC 
    GTCATCATGG TTAAGCATAG AAGGGATTCG CTACCAGTGT GGATGCGTGT 
    ATTGGCTATA CCCATCCTTC ATTGAGCTTT CTTTATGACT TTGGCTCTTT 
    CGCCTTTTAG AACTTTGCGC GTAAACATTT TCGAACCTAG ACTGGTATTA 
    TAAGTTTCAT ATCGTTTTGA TATGATGCAT ATAATGATTG GATCAAGTGT 
    TGCTTATATA ATTGGGACTA TTGGGTTAT

    Gene models with high sequence identity

    1. AT5G65260.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart RNA recognition motif, RNP-1 8.1e-21
    HMMPfam RNA recognition motif, RNP-1 4.1e-18
    HMMPfam Paraquat-inducible protein A 0.000084
    Coil coiled-coil 0
    ProfileScan RNA recognition motif, RNP-1 16.978
    superfamily RNA-binding domain, RBD 2e-25
    Gene3D Nucleotide-binding, alpha-beta plait 2e-21
    HMMPanther POLY-A BINDING PROTEIN 2 9.4e-28

    See the detailed result >

    AT5G65260.1

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G10350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR