F22820

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22820

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22820

Determination of introduced cDNA(s)

  • RAFL03-04-L10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL03-04-L10 - Resource: pda00140

    full reading [+] show sequence

    Nucleotide sequence: RAFL03-04-L10 - full reading
    AGCTCTTCCT AGTGTTAAAC CAGAGTAAAG CTTGAAACTT TGGACTAAAA 
    GAATGGCGTC TTTGGGTGTG TCGGAAATGC TTGGTACTCC CCTTAACTTC
    AGGGCAGTTT CAAGATCGTC TGCTCCGTTG GCATCAAGCC CATCCACGTT
    CAAGACTGTT GCTCTCTTCT CTAAGAAAAA GCCAGCTCCT GCTAAGTCCA
    AGGCTGTCTC TGAGACTAGC GATGAGCTCG CCAAGTGGTA TGGTCCTGAC
    AGGAGAATTT TCTTGCCTGA TGGTCTTTTG GATAGATCAG AGATCCCAGA
    GTACTTAAAC GGTGAAGTTG CTGGAGATTA TGGTTATGAC CCATTTGGTC
    TTGGAAAGAA GCCTGAGAAC TTTGCTAAAT ACCAAGCTTT TGAATTGATC
    CATGCGAGAT GGGCTATGTT AGGAGCAGCT GGTTTCATCA TTCCTGAAGC
    TTTAAACAAA TATGGCGCTA ACTGTGGCCC TGAAGCTGTC TGGTTTAAGA
    CTGGTGCTTT GCTTCTTGAT GGAAACACAT TGAACTACTT TGGCAAGAAC
    ATCCCTATCA ACCTTGTTCT CGCCGTAGTT GCTGAGGTTG TTCTCCTCGG
    TGGAGCCGAG TACTACAGAA TCACCAACGG ATTGGATTTC GAGGACAAGC
    TACACCCAGG AGGTCCATTT GATCCTCTAG GCCTTGCTAA GGACCCTGAG
    CAAGGAGCTC TTCTCAAAGT CAAAGAGATC AAGAACGGGA GATTAGCCAT
    GTTTGCGATG CTCGGTTTCT TTATCCAAGC GTATGTTACC GGAGAAGGTC
    CTGTTGAGAA CCTTGCAAAG CATCTCAGTG ATCCTTTTGG AAACAACTTG
    CTTACCGTCA TCGCTGGAAC TGCCGAGAGA GCTCCCACTC TCTAAGCCAT
    TTCTACTTTT TTTAAGAGCT TCCAAAATGT ACACTTTGTT CGATTGGAAC
    TCCTTTTGAC AATGTTAAAA AAACTTCCAT CT

    Gene models with high sequence identity

    1. AT4G10340.1 [+] show detail - light harvesting complex of photosystem II 5
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Chloroa_b-bind 5.6e-46
    HMMPanther Chlorophyll A-B binding protein 1.1e-112
    superfamily Chlorophyll a-b binding protein 7e-61

    See the detailed result >

    AT4G10340.1

    Model type
    Protein coding
    Short Description
    light harvesting complex of photosystem II 5
    Curator Summary
    photosystem II encoding the light-harvesting chlorophyll a/b binding protein CP26 of the antenna system of the photosynthetic apparatus
    Computational Description
    light harvesting complex of photosystem II 5 (LHCB5); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis, nonphotochemical quenching; LOCATED IN: in 9 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: chlorophyll A/B binding protein 1 (TAIR:AT1G29930.1); Has 2360 Blast hits to 2295 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2013; Viruses - 0; Other Eukaryotes - 343 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR