F22820

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22820

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22820

Determination of introduced cDNA(s)

  • RAFL03-04-L10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL03-04-L10 - Resource: pda00140

    full reading [+] show sequence

    Nucleotide sequence: RAFL03-04-L10 - full reading 
    AGCTCTTCCT AGTGTTAAAC CAGAGTAAAG CTTGAAACTT TGGACTAAAA 
    GAATGGCGTC TTTGGGTGTG TCGGAAATGC TTGGTACTCC CCTTAACTTC 
    AGGGCAGTTT CAAGATCGTC TGCTCCGTTG GCATCAAGCC CATCCACGTT 
    CAAGACTGTT GCTCTCTTCT CTAAGAAAAA GCCAGCTCCT GCTAAGTCCA 
    AGGCTGTCTC TGAGACTAGC GATGAGCTCG CCAAGTGGTA TGGTCCTGAC 
    AGGAGAATTT TCTTGCCTGA TGGTCTTTTG GATAGATCAG AGATCCCAGA 
    GTACTTAAAC GGTGAAGTTG CTGGAGATTA TGGTTATGAC CCATTTGGTC 
    TTGGAAAGAA GCCTGAGAAC TTTGCTAAAT ACCAAGCTTT TGAATTGATC 
    CATGCGAGAT GGGCTATGTT AGGAGCAGCT GGTTTCATCA TTCCTGAAGC 
    TTTAAACAAA TATGGCGCTA ACTGTGGCCC TGAAGCTGTC TGGTTTAAGA 
    CTGGTGCTTT GCTTCTTGAT GGAAACACAT TGAACTACTT TGGCAAGAAC 
    ATCCCTATCA ACCTTGTTCT CGCCGTAGTT GCTGAGGTTG TTCTCCTCGG 
    TGGAGCCGAG TACTACAGAA TCACCAACGG ATTGGATTTC GAGGACAAGC 
    TACACCCAGG AGGTCCATTT GATCCTCTAG GCCTTGCTAA GGACCCTGAG 
    CAAGGAGCTC TTCTCAAAGT CAAAGAGATC AAGAACGGGA GATTAGCCAT 
    GTTTGCGATG CTCGGTTTCT TTATCCAAGC GTATGTTACC GGAGAAGGTC 
    CTGTTGAGAA CCTTGCAAAG CATCTCAGTG ATCCTTTTGG AAACAACTTG 
    CTTACCGTCA TCGCTGGAAC TGCCGAGAGA GCTCCCACTC TCTAAGCCAT 
    TTCTACTTTT TTTAAGAGCT TCCAAAATGT ACACTTTGTT CGATTGGAAC 
    TCCTTTTGAC AATGTTAAAA AAACTTCCAT CT

    Gene models with high sequence identity

    1. AT4G10340.1 [+] show detail - light harvesting complex of photosystem II 5
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Chloroa_b-bind 5.6e-46
    HMMPanther Chlorophyll A-B binding protein 1.1e-112
    superfamily Chlorophyll a-b binding protein 7e-61

    See the detailed result >

    AT4G10340.1

    Model type
    Protein coding
    Short Description
    light harvesting complex of photosystem II 5
    Curator Summary
    photosystem II encoding the light-harvesting chlorophyll a/b binding protein CP26 of the antenna system of the photosynthetic apparatus
    Computational Description
    light harvesting complex of photosystem II 5 (LHCB5); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis, nonphotochemical quenching; LOCATED IN: in 9 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: chlorophyll A/B binding protein 1 (TAIR:AT1G29930.1); Has 2360 Blast hits to 2295 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2013; Viruses - 0; Other Eukaryotes - 343 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR