F22825

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22825

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22825

Determination of introduced cDNA(s)

  • RAFL05-21-P18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-21-P18 - Resource: pda02825

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-21-P18 - full reading
    ATTTATCTAT CTATCCAATT GGAGACGAAT CATATCGAGC GATGGATTTG 
    GCAGAACTGT GGGCGATTTT CGGACCCGGA TTCTCCGGCG CCGTTTTCGG
    AACCGGGTGG TGGTTTTGGG TCGACGCCGT CGTTTGCAGT TCCATCCAAG
    TTCCCTTCGT CCATTACCTT CCCGGCATAT TCGCTTCTCT CGGAGCTTTG
    ATGTTCAATT GCGTCAGAAA AGAAGACATT GATTACTCTC CTTACGACGA
    AGGCGAGTGG AGATTGAAGC TGTGGCTTTT CATAGCGTAT GTCGTAGCAT
    TTGTTTCCTT AGCTGCTTCT GTTGGCTTGC TGATTCAAGA TTCGGTTGTG
    AAGACTGGGC CTTCAACTTG GACTGGTGTG GCTGGTGTCT TTCAATGTGT
    ATTTGTATTG ATAAGTGGGC TAATGTATTG GACATCGCAC TCAGAGTAGC
    GCACAGGCAC ATACTTCATC TCCGACTCAG ATTCATACTG TGACAACTTA
    CAAGTTCCTC TCGTTTCTCT ACTATGTAAA TTCCTGTGTC TTGTCTTGTC
    ACCTTGGCAT TGTGTGCGAG ATTCCTCTGT TGCATCAGTG TGTGTTTCTG
    TTAAAACTTT GTGTGAATGT TATTGAAAAT ACTCCAAATC AATCAGTTGT
    CCAAAGAGAA CGCAAAAAAA AAAAAAAATA AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT1G36980.1 [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Uncharacterised protein family UPF0220 1.3e-66
    HMMPfam Uncharacterised protein family UPF0220 4.7e-39

    See the detailed result >

    AT1G36980.1

    Model type
    Protein coding
    Computational Description
    unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR007919); Has 424 Blast hits to 424 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 120; Plants - 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR