F22838

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22838

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22838

Determination of introduced cDNA(s)

  • RAFL05-13-E03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-13-E03 - Resource: pda09329

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-13-E03 - full reading 
    AGTTCTTTTC TTCTCTCCTC CTCTTTCTTC TCCCTGATTG GAATTTTAGG 
    GCTTTTGAAA GCACGAACGC GTGAAGCTCT AATCGAGAAA AAAATGGAGG 
    TTTTGGATAG GAGAGACGAT GAGATCAGGG ACTCGGGAAA CATGGACAGC 
    ATCAAGTCAC ACTATGTTAC CGACTCTGTT TCCGAGGAAC GCCGCTCTCG 
    TGAGCTCAAG GATGGAGACC ATCCTTTACG GTACAAGTTT TCGATATGGT 
    ACACTCGTCG CACACCAGGG GTTCGGAACC AGTCTTATGA AGATAACATC 
    AAGAAGATGG TAGAATTCAG CACGGTTGAA GGATTTTGGG CCTGCTACTG 
    TCACCTTGCT CGTTCTTCTC TCTTGCCTAG TCCAACAGAT CTTCATTTCT 
    TTAAGGATGG GATTCGTCCA TTGTGGGAGG ATGGTGCCAA CTGCAATGGA 
    GGAAAGTGGA TCATACGTTT CTCAAAAGTT GTATCTGCTC GCTTCTGGGA 
    GGATCTGCTT CTTGCGTTGG TAGGCGACCA GCTTGATGAT GCTGATAACA 
    TATGTGGGGC AGTACTGAGT GTCCGTTTCA ACGAGGACAT CATTAGTGTA 
    TGGAATCGCA ATGCTTCTGA CCATCAGGCA GTGATGGGTT TGAGAGACTC 
    AATCAAGCGG CATTTGAAGT TGCCTCATGC ATATGTCATG GAATACAAGC 
    CACACGATGC TTCTCTCCGC GACAACTCTT CCTACAGAAA CACATGGCTG 
    AGAGGATAGG CCCAAAGTCG ATGATTGTAT CATGTAATGT GGAGAAGATT 
    TGGGAAGCTC ATCTGCAACC TGGGAAGATA TCTGGATTGA ACCCTGTATC 
    CAATACCATA CTGTACCGGA GGCTTACAAT ATCAGAAAAA ACAAAATCCG 
    GGCTACTTCT GTGTCAGTAT GTGTTCATTT CGTTTTTCTT TTACAGTACA 
    TCTTGTTAAC TTCAATGGTT TGACTCTTGA TCAAAACTAT AAGGATGTAT 
    TTTCAATGAA AACTGGAAAT TACGTTCTGG TTTACT

    Gene models with high sequence identity

    1. AT5G18110.1 [+] show detail - novel cap-binding protein
      E-value: 0; Score: 99.90

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Eukaryotic translation initiation factor 4E (eIF-4E) 1.6e-53
    HMMPanther Eukaryotic translation initiation factor 4E (eIF-4E) 1.7e-73
    superfamily Eukaryotic translation initiation factor 4E (eIF-4E) 1.3e-60
    PatternScan Eukaryotic translation initiation factor 4E (eIF-4E), conserved site 0
    Gene3D Eukaryotic translation initiation factor 4E (eIF-4E) 3.7e-59

    See the detailed result >

    AT5G18110.1

    Model type
    Protein coding
    Short Description
    novel cap-binding protein
    Computational Description
    novel cap-binding protein (NCBP); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 4E (eIF-4E) (InterPro:IPR001040), Eukaryotic translation initiation factor 4E (eIF-4E), conserved site (InterPro:IPR019770); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4E (TAIR:AT4G18040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR