F22844

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22844

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22844

Determination of introduced cDNA(s)

  • RAFL05-02-I10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-02-I10 - Resource: pda00791

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-02-I10 - full reading
    AATGGCTCTG TTTTAAAAAG GGCAAATTAG AGAGATTTCT CCTTCAATAA 
    CAAAAAATCG CCAGCTTTAT CTCTCTCTTT TTCACATCCC ATGGCTAGAT
    GGTGACGACG ATTCACGCAT AAACTAGGGT TCCCCCACAA ATCATCTTAC
    ACGTATCCTC TATTCCTTCC TTCCTTTCTC CGTCATCATC ATTTTTCCCA
    CCGACAACAA TCTCTCGGAG TTTGGGTATT ATTACTTCTC TCATCAACCA
    ATTGTACCAC TAGATCTCCC AGATTCCTTC ATTATCTCTA TCAATAATGG
    CGTTGAAGTC TAGTTCTGCT GATGGTAAAA CCAGAAGCTC TGTTCAGATC
    TTCATTGTGT TTAGTTTATG TTGCTTCTTT TACATTTTGG GAGCATGGCA
    ACGAAGTGGT TTTGGTAAAG GAGACAGTAT TGCTCTTGAG ATGACCAACA
    GTGGAGCTGA TTGCAACATT GTTCCTAGCT TGAATTTCGA GACTCATCAC
    GCTGGCGAAT CAAGTCTTGT TGGTGCTTCT GAAGCTGCAA AGGTCAAGGC
    TTTCGAGCCC TGTGATGGTC GTTACACGGA TTACACTCCT TGTCAAGATC
    AGAGACGTGC CATGACTTTC CCGAGAGATA GTATGATTTA CCGAGAAAGG
    CATTGCGCTC CTGAGAATGA GAAGCTCCAT TGTCTTATAC CGGCTCCTAA
    AGGATATGTG ACACCTTTCT CTTGGCCTAA GAGTCGAGAC TATGTGCCTT
    ATGCTAATGC GCCGTATAAA GCATTGACTG TTGAGAAGGC TATTCAGAAT
    TGGATTCAGT ATGAGGGAGA CGTTTTTAGA TTCCCTGGTG GTGGAACTCA
    GTTCCCTCAA GGTGCTGATA AGTATATCGA TCAGCTTGCT TCCGTGATAC
    CTATGGAGAA CGGAACTGTT AGGACTGCTT TGGACACTGG TTGTGGGGTT
    GCAAGTTGGG GAGCGTACTT ATGGAGCAGA AATGTGCGTG CAATGTCTTT
    TGCACCAAGA GATTCACACG AGGCTCAGGT CCAGTTTGCT CTCGAGAGAG
    GTGTTCCCGC TGTTATTGGT GTTCTTGGTA CCATAAAGTT GCCATACCCA
    ACACGTGCTT TCGACATGGC TCATTGCTCT CGGTGTTTGA TTCCATGGGG
    AGCAAATGAT GGGATGTACT TGATGGAAGT TGACCGTGTG CTTAGACCTG
    GTGGGTACTG GATTCTGTCT GGTCCTCCAA TCAACTGGAA AGTCAACTAC
    AAGGCATGGC AACGTCCCAA GGAGGACCTT CAAGAGGAAC AAAGAAAGAT
    TGAGGAAGCT GCTAAACTTC TTTGTTGGGA GAAAAAGTAT GAACACGGTG
    AGATTGCAAT TTGGCAGAAG AGAGTCAATG ATGAGGCATG CCGATCAAGA
    CAAGATGATC CTAGAGCCAA TTTCTGCAAA ACCGATGATA CCGATGATGT
    CTGGTACAAG AAAATGGAGG CATGTATTAC ACCGTATCCG GAGACAAGTA
    GCTCAGATGA AGTAGCTGGT GGTGAGCTTC AGGCTTTCCC AGATAGGCTC
    AATGCAGTGC CGCCCAGGAT CTCTAGCGGT TCGATCTCTG GTGTTACTGT
    TGATGCCTAT GAAGACGATA ACAGACAGTG GAAAAAACAT GTGAAAGCCT
    ACAAGAGAAT CAACAGTCTA CTTGACACTG GAAGGTACCG TAACATCATG
    GACATGAACG CAGGGTTTGG TGGATTTGCT GCTGCTCTTG AATCCCAAAA
    GCTTTGGGTT ATGAATGTTG TTCCCACAAT TGCCGAAAAG AACAGACTCG
    GAGTTGTATA TGAACGAGGA CTCATCGGTA TCTACCATGA CTGGTGTGAG
    GCTTTCTCTA CATATCCAAG AACATATGAC CTGATCCACG CGAACCACCT
    CTTCAGTCTA TACAAGAACA AGTGCAATGC GGATGATATT CTTCTAGAGA
    TGGATAGAAT TCTCCGACCA GAAGGAGCGG TTATAATCCG GGATGATGTG
    GATACATTGA TCAAGGTGAA GAGAATCATC GCTGGAATGA GATGGGATGC
    GAAGCTTGTC GATCATGAGG ATGGTCCTTT AGTTCCTGAG AAGGTTTTGA
    TTGCCGTGAA GCAGTATTGG GTCACCAACT CCACCTCGAC TCACTGAAGT
    TACTTTATTT CCGGTGTGAC CTGACATTTT GATCAAATGA TAGAGCTTTC
    GTCCTTAGGG AATGTGAGAG AGCTGCAAAT CTTGTCTTTA AACACTTTTT
    GAAGTATCTA TTTATTGATG TTATAGTTTA TTTTTGTTTC CCAAAC

    Gene models with high sequence identity

    1. AT1G26850.1 [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF248, methyltransferase putative 8.2e-232
    Gene3D no description 2.4e-06
    superfamily S-adenosyl-L-methionine-dependent methyltrans 8.1e-28
    superfamily S-adenosyl-L-methionine-dependent methyltrans 4.2e-14

    See the detailed result >

    AT1G26850.1

    Model type
    Protein coding
    Short Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    Computational Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G18030.1); Has 1056 Blast hits to 1041 proteins in 100 species: Archae - 0; Bacteria - 128; Metazoa - 0; Fungi - 0; Plants - 923; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR