F22844

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22844

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22844

Determination of introduced cDNA(s)

  • RAFL05-02-I10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-02-I10 - Resource: pda00791

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-02-I10 - full reading 
    AATGGCTCTG TTTTAAAAAG GGCAAATTAG AGAGATTTCT CCTTCAATAA 
    CAAAAAATCG CCAGCTTTAT CTCTCTCTTT TTCACATCCC ATGGCTAGAT 
    GGTGACGACG ATTCACGCAT AAACTAGGGT TCCCCCACAA ATCATCTTAC 
    ACGTATCCTC TATTCCTTCC TTCCTTTCTC CGTCATCATC ATTTTTCCCA 
    CCGACAACAA TCTCTCGGAG TTTGGGTATT ATTACTTCTC TCATCAACCA 
    ATTGTACCAC TAGATCTCCC AGATTCCTTC ATTATCTCTA TCAATAATGG 
    CGTTGAAGTC TAGTTCTGCT GATGGTAAAA CCAGAAGCTC TGTTCAGATC 
    TTCATTGTGT TTAGTTTATG TTGCTTCTTT TACATTTTGG GAGCATGGCA 
    ACGAAGTGGT TTTGGTAAAG GAGACAGTAT TGCTCTTGAG ATGACCAACA 
    GTGGAGCTGA TTGCAACATT GTTCCTAGCT TGAATTTCGA GACTCATCAC 
    GCTGGCGAAT CAAGTCTTGT TGGTGCTTCT GAAGCTGCAA AGGTCAAGGC 
    TTTCGAGCCC TGTGATGGTC GTTACACGGA TTACACTCCT TGTCAAGATC 
    AGAGACGTGC CATGACTTTC CCGAGAGATA GTATGATTTA CCGAGAAAGG 
    CATTGCGCTC CTGAGAATGA GAAGCTCCAT TGTCTTATAC CGGCTCCTAA 
    AGGATATGTG ACACCTTTCT CTTGGCCTAA GAGTCGAGAC TATGTGCCTT 
    ATGCTAATGC GCCGTATAAA GCATTGACTG TTGAGAAGGC TATTCAGAAT 
    TGGATTCAGT ATGAGGGAGA CGTTTTTAGA TTCCCTGGTG GTGGAACTCA 
    GTTCCCTCAA GGTGCTGATA AGTATATCGA TCAGCTTGCT TCCGTGATAC 
    CTATGGAGAA CGGAACTGTT AGGACTGCTT TGGACACTGG TTGTGGGGTT 
    GCAAGTTGGG GAGCGTACTT ATGGAGCAGA AATGTGCGTG CAATGTCTTT 
    TGCACCAAGA GATTCACACG AGGCTCAGGT CCAGTTTGCT CTCGAGAGAG 
    GTGTTCCCGC TGTTATTGGT GTTCTTGGTA CCATAAAGTT GCCATACCCA 
    ACACGTGCTT TCGACATGGC TCATTGCTCT CGGTGTTTGA TTCCATGGGG 
    AGCAAATGAT GGGATGTACT TGATGGAAGT TGACCGTGTG CTTAGACCTG 
    GTGGGTACTG GATTCTGTCT GGTCCTCCAA TCAACTGGAA AGTCAACTAC 
    AAGGCATGGC AACGTCCCAA GGAGGACCTT CAAGAGGAAC AAAGAAAGAT 
    TGAGGAAGCT GCTAAACTTC TTTGTTGGGA GAAAAAGTAT GAACACGGTG 
    AGATTGCAAT TTGGCAGAAG AGAGTCAATG ATGAGGCATG CCGATCAAGA 
    CAAGATGATC CTAGAGCCAA TTTCTGCAAA ACCGATGATA CCGATGATGT 
    CTGGTACAAG AAAATGGAGG CATGTATTAC ACCGTATCCG GAGACAAGTA 
    GCTCAGATGA AGTAGCTGGT GGTGAGCTTC AGGCTTTCCC AGATAGGCTC 
    AATGCAGTGC CGCCCAGGAT CTCTAGCGGT TCGATCTCTG GTGTTACTGT 
    TGATGCCTAT GAAGACGATA ACAGACAGTG GAAAAAACAT GTGAAAGCCT 
    ACAAGAGAAT CAACAGTCTA CTTGACACTG GAAGGTACCG TAACATCATG 
    GACATGAACG CAGGGTTTGG TGGATTTGCT GCTGCTCTTG AATCCCAAAA 
    GCTTTGGGTT ATGAATGTTG TTCCCACAAT TGCCGAAAAG AACAGACTCG 
    GAGTTGTATA TGAACGAGGA CTCATCGGTA TCTACCATGA CTGGTGTGAG 
    GCTTTCTCTA CATATCCAAG AACATATGAC CTGATCCACG CGAACCACCT 
    CTTCAGTCTA TACAAGAACA AGTGCAATGC GGATGATATT CTTCTAGAGA 
    TGGATAGAAT TCTCCGACCA GAAGGAGCGG TTATAATCCG GGATGATGTG 
    GATACATTGA TCAAGGTGAA GAGAATCATC GCTGGAATGA GATGGGATGC 
    GAAGCTTGTC GATCATGAGG ATGGTCCTTT AGTTCCTGAG AAGGTTTTGA 
    TTGCCGTGAA GCAGTATTGG GTCACCAACT CCACCTCGAC TCACTGAAGT 
    TACTTTATTT CCGGTGTGAC CTGACATTTT GATCAAATGA TAGAGCTTTC 
    GTCCTTAGGG AATGTGAGAG AGCTGCAAAT CTTGTCTTTA AACACTTTTT 
    GAAGTATCTA TTTATTGATG TTATAGTTTA TTTTTGTTTC CCAAAC

    Gene models with high sequence identity

    1. AT1G26850.1 [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF248, methyltransferase putative 8.2e-232
    Gene3D no description 2.4e-06
    superfamily S-adenosyl-L-methionine-dependent methyltrans 8.1e-28
    superfamily S-adenosyl-L-methionine-dependent methyltrans 4.2e-14

    See the detailed result >

    AT1G26850.1

    Model type
    Protein coding
    Short Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    Computational Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G18030.1); Has 1056 Blast hits to 1041 proteins in 100 species: Archae - 0; Bacteria - 128; Metazoa - 0; Fungi - 0; Plants - 923; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR