F22903

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22903

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22903

Determination of introduced cDNA(s)

  • RAFL06-68-C07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-68-C07 - Resource: pda07613

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-68-C07 - full reading 
    GGAGAGAGAG AAAGATGCAG AGGGACGTGT CGAGCTGCAA CACTTACAAC 
    TATGGAGACG CTCTCTATTG GGACGCTCGT TACGTGCAAG ACGCGCTTTC 
    TTTCGACTGG TACCAATGTT ACTCTTCTCT CCGCCCTTTT GTCCGCAGCT 
    TCGTCTCTAC TTCTTCACGA GTCCTCATGG TTGGCTGTGG CAACTCCCTG 
    ATGTCAGAGG ATATGGTGAA GGATGGGTAT GAGGACATCA TGAATGTTGA 
    TATCTCTTCA GTGGCTATTG AGATGATGCA AACCAAATAT GCATCTGTTC 
    CTCAGCTCAA ATATATGCAA ATGGATGTTA GAGATATGAG TTACTTTGAA 
    GACGATTCCT TTGACACTAT TATTGATAAA GGAACCCTTG ATTCATTGAT 
    GTGTGGCAGT GATGCTCTTC TAAGTGCTTC GAGAATGTTG GGTGAAGTTA 
    GCAGGCTGAT TAAACCTGGA GGGACCTACT TTTTGATAAC CTACGGTGAT 
    CCGAAAGTGA GAATGCCTCA TTTGACTCGT TCTGCGTACA ACTGGAAGAT 
    CTCCTTATAC ATTATACCAA GACCAGGATT TAAAAGGCCA GAAAGTTGCA 
    GCTCGTCAGC AAAGTCTTGT ATGGAAGCTA TACCTATAAC AAGTGAGGGA 
    ATGCTGCCAC ATGATTATGT TCTGGAGGAT CCTGATTCCC ATTTTATTTA 
    CATATGCAAG AAGAAGGATG AAGATGAAGA AGCTCAACTA CCCTCATACC 
    CATTAATGGA GGATGTTTTG TAGTGATGGC ACGCAGAGGC TCAAACAATG 
    CAAAATTGTG CATGTGTGTT TGTCTTTTTG ATCCCCATTT AGACCAGTCG 
    ATCTATTGTT GTATTTTATG TGTCTTGTGA TCTTATCCCA ATTGATAGGT 
    CCGAGTCTCA GAATTGCTCT ATAAACTCAT AATATACGAA TAAACATCAA 
    CCTTTATTAT CTCGAAAAAA AAAAAAAAAA

    Gene models with high sequence identity

    1. AT3G60910.1 [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UNCHARACTERIZED 4e-100
    superfamily S-adenosyl-L-methionine-dependent methyltrans 1.1e-21
    Gene3D no description 1.6e-09
    HMMPfam Methyltransferase type 11 1.2e-11

    See the detailed result >

    AT3G60910.1

    Model type
    Protein coding
    Short Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    Computational Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G17365.1); Has 1732 Blast hits to 1731 proteins in 520 species: Archae - 43; Bacteria - 761; Metazoa - 337; Fungi - 50; Plants - 206; Viruses - 0; Other Eukaryotes - 335 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR