F22915

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22915

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F22915

Determination of introduced cDNA(s)

  • RAFL11-05-B04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL11-05-B04 - Resource: pda17970

    full reading [+] show sequence

    Nucleotide sequence: RAFL11-05-B04 - full reading
    CTGGAGCTAA AAACGGTTTC AATCGAATTA AAGTCAATGG CGTCACGTTT 
    ATGTCTTCTC CTTCTCGTTG CGTGTATCGC CGGAGCATTT GCCGGAGACG
    TCATCGAACT CAATCGATCT CAGAGGGAGT TCGATTATTT CGCTCTATCT
    CTTCAATGGC CTGGAACCTA TTGCCGTGGA ACTCGCCATT GTTGCTCCAA
    AAACGCTTGC TGCAGAGGCT CCGATGCTCC AACTCAATTC ACAATTCATG
    GGTTATGGCC TGACTATAAC GATGGTTCGT GGCCTTCATG TTGTTATCGA
    TCTGACTTTA AAGAGAAGGA GATTTCAACG TTGATGGATG GTCTTGAGAA
    GTACTGGCCT AGTCTCAGTT GTGGTTCTCC ATCATCATGC AATGGTGGGA
    AAGGGTCATT TTGGGGCCAC GAGTGGGAGT TCCATGCTTA ATCTCACAAC
    CTTTTGCATA ACAAGAAACA TGGGACTTGT TCTTCTCCTG TTTTTCATGA
    TGAGTATAAT TACTTCCTTA CCACACTTAA TCTCTACTTG AAGCATAATG
    TCACGGATGT CCTTTATCAA GCTGGCTATG TTGCTTCCAA CAGTGAAAAG
    TATCCTCTAG GAGGTATCGT AACAGCCATT CAGAATGCAT TTCATATCAC
    CCCTGAAGTG GTTTGCAAAA GAGATGCAAT CGATGAAATA CGTATATGCT
    TCTATAAAGA TTTTAAGCCC AGGGACTGTG TTGGTTCACA AGATTTGACA
    TCTAGAAAGT CATGCCCCAA GTACGTAAGT TTGCCGGAAT ACACGCCATT
    AGATGGTGAA GCTATGGTTC TGAAGATGCC AACAGAAAGA GAAGCTCTTT
    GAATCGGAAA AGATGGGAGC TTTGTTATCT TCTGAGAGAC AATACATACA
    TGTCTCTGAT GTTGTAACTT TACTACCAAA ACCTATAAAG ATTGGCTTAT
    TTCGTTCTAT TGGATATGTA TCATCATTAC TGGTAAATCA AGTTTCTTTC
    TAATAATGTA GAAGATCAGA AAAAAAA

    Gene models with high sequence identity

    1. AT2G39780.1 [+] show detail - ribonuclease 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribonuclease T2 5.8e-27
    HMMPfam Ribonuclease T2 9.6e-21
    superfamily Ribonuclease T2 1.4e-29
    superfamily Ribonuclease T2 4.3e-26
    HMMPanther RIBONUCLEASE T2 9.8e-29
    HMMPanther Ribonuclease T2 9.8e-29
    HMMPanther RIBONUCLEASE T2 2.3e-35
    HMMPanther Ribonuclease T2 2.3e-35
    Gene3D Ribonuclease T2 2.8e-28
    Gene3D Ribonuclease T2 1.1e-21
    PatternScan Ribonuclease T2, active site 0

    See the detailed result >

    AT2G39780.1

    Model type
    Protein coding
    Short Description
    ribonuclease 2
    Curator Summary
    S-like ribonuclease
    Computational Description
    ribonuclease 2 (RNS2); FUNCTIONS IN: ribonuclease T2 activity, endoribonuclease activity, RNA binding; INVOLVED IN: aging; LOCATED IN: intracellular, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568), Ribonuclease T2, active site (InterPro:IPR018188); BEST Arabidopsis thaliana protein match is: Ribonuclease T2 family protein (TAIR:AT1G14220.1); Has 2318 Blast hits to 2317 proteins in 471 species: Archae - 0; Bacteria - 380; Metazoa - 295; Fungi - 231; Plants - 1299; Viruses - 5; Other Eukaryotes - 108 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR