F22949

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22949

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22949

Determination of introduced cDNA(s)

  • RAFL06-86-A08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-86-A08 - Resource: pda03884

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-86-A08 - full reading
    AGAAGAAATC TTTCAGATTT GCGCATATCG ACAATTTTCC GAGCGGCCAG 
    TTTACGTATT TTGTTTGTAG TTAACGTGTT TCAAGGACTT TGACAATGGC
    TGAGGAAGCG CATAAGGTAA CATTGAATGT CTATGATTTA AGCCAAGGCT
    TGGCACGCCA GCTCTCACAA TCACTCCTGG GAAAGGTTAT TGAAGGTGTA
    TGGCATACAG GAATAGTTGT CTATGGGAAT GAGTACTTTT TTGGAGGAGG
    GATACAACAT TTACCAGTTG GAAGAACTCC ATATGGAACA CCAATTCGAA
    CGATAGAGTT GGGTCTATCA CATGTGCCTA AAGATGTATT CGAGATGTAC
    TTGGAAGAAA TCAGTCCTCG TTACACTGCT GAATCCTACA ATTTACTTAC
    TCACAACTGC AACAACTTCA GCAACGAGGT CGCTCAGTTT TTGGTGGGTA
    AAGGGATTCC TGACTACATT CTCCAGCTTC CTAATGATGT TCTAAACAGT
    CCCATGGGTG GTCTTATAAT GCCTATGTTG CAAGGCCTCG AAACAACTCT
    AAAGGCTGGT GCTGTTCCTC AAGTTCCACA GTTTAGGCCA CAGCCACAAC
    CTTTTGGAGC TTTTAGTAAA GATGATGGCC CACAAATTGT GATAGCTCCT
    AAGCTCGAGG CAGCAGAAAC CTCAACTGCA ACTGAGAAAG TGCCACCTGT
    TATTCAACCA TCAGCTAGTA AAGAGAAGGT CAAGGACGAC CCGTTGGGTG
    ATGCTAGGGC CAAGATTCAG GAAGAGATTA CAAGCGAATT TGCAGCTCTA
    ATGGCACAAG GCACATTACG AGCAAGTGAA GCAGCTGCTA TGGCGACAAA
    AAGAGTCATG CAAAAGTACG GACATCTCAA TGTAAACGCT TAGTGCAATA
    ACAGAGAGAT GAAACATTTT ATTAAAAAAA AAAAAAAAA

    Gene models with high sequence identity

    1. AT3G07090.1 [+] show detail - PPPDE putative thiol peptidase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UNCHARACTERIZED 2e-53
    HMMPfam Protein of unknown function DUF862, eukaryotic 3.1e-42

    See the detailed result >

    AT3G07090.1

    Model type
    Protein coding
    Short Description
    PPPDE putative thiol peptidase family protein
    Computational Description
    PPPDE putative thiol peptidase family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: PPPDE putative thiol peptidase family protein (TAIR:AT5G25170.1); Has 872 Blast hits to 872 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 235; Fungi - 119; Plants - 332; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR