F23019

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23019

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23019

Determination of introduced cDNA(s)

  • RAFL17-39-M11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL17-39-M11 - Resource: pda10747

    full reading [+] show sequence

    Nucleotide sequence: RAFL17-39-M11 - full reading 
    ATAAATATTA ATTTTATTTT GGGTCGCCGC TTGATTTTCT GGTGGGGAAG 
    TCGTAATCGT TAAATTAGGG TCTTCCCTTC TTCTTCTTCT ACATCTCCTC 
    AGCCGTTTCC TACGGAGGAT TCCGATCGAT CCCTTTTCTC TTTTTTTTTT 
    TTTCTTCTGG TCACCGAATC ATTGTCATAC CCCACTTTGA GCTCACAACT 
    CTTCTTCCTC AGATTGCTTG ATTAGGGTTT TCTTCTGCTT GCCGAATTGA 
    TTTCCAAGGA ACAACTTTTT ATTTATTTTC ATCACCTAAT CTTTCGTTTT 
    CAGATTCCGA GTATCCAAAT AATATTTTTA TATTTTCTCT TTCGCCGCCA 
    TGAGTTCCTC GATCCAGATC GTTGTTGAGG AGAAGCAAGT GGATGTTTTG 
    CCTCTTCAAG ATCAGGATGA AAAGAAGACT CCACAAGTGT TCAATGAGCT 
    GAGTTTCGGG AACCATGGGG GCTGTTGTGC AATTTGCTTG GATACTATAC 
    CTCTTCAAGA AACAGCTATG GTTAAAGGCT GTGAGCATGC TTACTGTGTG 
    ACGTGCATAC TCCGTTGGGC AAGTTACAAG GAGAAACCTA CCTGCCCACA 
    ATGTAAGCTT CCATTTGATT TTCTCAATGT CCACCGCGCT CTCGATGGAA 
    GCGTTGAAGA TTTCATGTTC GAGGAGAGTG TATGCCTCCT CCTGAGGGCA 
    TCATGGTTCC AGCCACTGGA AGCAGTGGAG CGGGTTTCAG ACAATGACAA 
    TTTCAACTAT GATTTCGACA TTCCACCTGA GTATGAGGAG GAGGATGAGG 
    ACGACGATGA CCTTGACGAG TTTTATATGC AAGGTTCAAG TCTTCGATTA 
    GGAAACCGGA GGTGGGGTGA CAATGGATTT GTGAGGGCAG GCCGCCAAGA 
    AGCAAGGCCA GTCCAACATA AGAACCGAGG TGGCCAGGCT TCTGGCTCTG 
    AACCCGCCTC TTCATCCTCA TGTGAGCCAA AGGAGAAGAC TAGCAGTGCC 
    ATAACAGGAA GGCGTGCAAA GAGGGCAATG AAGCGTGAAG CTGCAAACAA 
    AGCTGCGGAA GCAGTAGCAG CTGCAAAGCA TGAGGCCCTT TTGGTTAGGT 
    TGGGAAGGAA GTGACTGTGG TTGTATCTCT GTAATTACAT CAACCCACCC 
    CAACCCCAAA TGACCAAATC CTTTGACTTC GATACTTGAG AATCTGTACA 
    TCAGTAGAAT TTAATAATGG TAGAACTTGT TGAACCAAAA AAAG

    Gene models with high sequence identity

    1. AT5G12310.1 [+] show detail - RING/U-box superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Zinc finger, RING-type 0.0000016
    ProfileScan Zinc finger, RING-type 12.445
    HMMPfam Zinc finger, C3HC4 RING-type 0.00000045
    PatternScan Zinc finger, RING-type, conserved site 0
    Gene3D no description 0.0000000022
    superfamily RING/U-box 0.000000000000096
    HMMPanther gb def: Hypothetical protein At2g28920 0.00025
    HMMPanther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D 0.00025

    See the detailed result >

    AT5G12310.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G19430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR