F23106

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23106

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23106

Determination of introduced cDNA(s)

  • RAFL05-16-B15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-16-B15 - Resource: pda07343

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-16-B15 - full reading 
    ACTACACCCA AAAAAGCTTC TAACAAAGAG AAAGTGTCTG TATGTTGTGC 
    CCACTCTCTA CATTTATCAA TCACTTCATG TGTGTTACCT TGATTGCAAA 
    AAAGTGAGAA TATATTCTCA CAACATTAAA TCCACCCCGA AATCGAAGTG 
    AGTATATCAC GAGTGTAGTA ATATCTTAGA GATGGTTTTG GAGGATAGAA 
    AGGACGGTTC TTCTTTGCCG GGACGATCCG GTAGTTTCTC TAAATCGTCA 
    CCGTCGGAGT TGGATGTTGT TGATCCCTAC AAGCGGATAA GTTCGCCGGG 
    ATCTATATTG GATGCTGAGA AGGTAGAGAA AAAGCCTGGA GGATGGAGAG 
    CCGTCTCGTT CATTTTAGGA AATGAGACGC TGGAGAGACT GGGATCGATA 
    GGATTGTTGG CAAACTTCAT GGTTTATCTA ACCAAAGTGT TTCACTTAGA 
    ACAAGTCGAC GCTGCAAATG TCATCAACAT TTGGTCAGGT TTCACCAATC 
    TCACTCCTCT CGTCGGAGCG TATATCTCAG ACACTTATGT TGGCCGCTTC 
    AAGACCATCG CTTTCGCCTC ATTCGCCACT CTCCTCGGAC TAATAACAAT 
    TACACTCACA GCATCGTTTC CTCAACTCCA CCCAGCATCA TGCAACAGCC 
    AGGACCCACT CAGTTGCGGC GGTCCGAATA AGCTCCAGAT CGGAGTTTTG 
    CTATTGGGAC TCTGTTTCCT CTCCGTAGGG AGTGGAGGAA TACGACCTTG 
    TAGCATCCCT TTTGGGGTTG ATCAGTTTGA CCAACGAACT GAGGAAGGGG 
    TTAAAGGAGT GGCCAGTTTC TTCAACTGGT ATTACATGAC TTTCACTGTG 
    GTTCTGATCA TTACACAGAC CGTAGTTGTG TATATCCAGG ATCAAGTCAG 
    TTGGATTATC GGTTTTAGTA TCCCTACCGG ACTCATGGCT CTTGCGGTTG 
    TTATGTTTTT TGCCGGAATG AAGCGTTATG TCTACGTTAA ACCAGAAGGA 
    AGTATATTCT CTGGGATCGC TCAAGTTATC GTGGCAGCTC GTAAGAAGCG 
    AAAGCTGAAA CTTCCGGCGG AAGATGACGG CACTGTCACC TATTACGACC 
    CAGCCATCAA GTCTAGCGTG TTATCCAAGT TACACCGCAG TAACCAATTC 
    AGGTGTCTTG ACAAAGCCGC GGTGGTTATA GAAGGTGACC TAACACCCGA 
    GGGACCTCCC GCAGACAAGT GGCGGTTATG CAGCGTCCAA GAAGTGGAAG 
    AAGTGAAGTG TTTGATCCGA ATTGTTCCTA TCTGGTCGGC CGGAATAATC 
    TCACTCGCGG CCATGACAAC ACAAGGCACT TTCACGGTCT CTCAAGCTTT 
    GAAAATGGAT CGAAACTTAG GTCCTAAATT CGAGATTCCG GCTGGTTCAC 
    TCTCCGTCAT CTCTCTCCTC ACAATCGGCA TCTTTCTTCC CTTCTACGAC 
    CGCGTTTTTG TACCATTCAT GCGGCGAATC ACCGGCCATA AATCCGGAAT 
    CACACTCCTC CAAAGGATAG GAACAGGGAT CGTTTTCGCG ATCTTTTCTA 
    TGATCGTTGC GGGCATTGTG GAGCGTATGA GACGCATACG CTCCATCAAT 
    GCCGGAGATC CAACGGGAAT GACTCCAATG TCGGTGTTTT GGCTTTCGCC 
    GCAGCTAATT CTCATGGGAC TATGTGAAGC ATTCAATATC ATCGGACAAA 
    TTGAGTTCTT CAACAGTCAG TTTCCAGAGC ACATGAGAAG TATCGCTAAC 
    TCTCTCTTCT CTTTATCGTT CGCCGGTTCG AGCTACCTTA GTAGTTTCCT 
    TGTGACTGTC GTTCATAAAT TCTCCGGTGG GCATGATCGT CCGGATTGGC 
    TAAACAAGAA TCTCAACGCG GGAAAATTGG ATTACTTCTA TTATCTGATT 
    GCGGTTTTGG GTGTGGTTAA TCTGGTTTAC TTTTGGTATT GTGCTCGGGG 
    ATACCGGTAC AAGGTCGGTT TACCGATTGA AGACTTTGAG GAGGACAAGT 
    CCTCCGATGA TGTTGAGATG ACTTCGAAGA AATCGATGAA ATGATTTAAT 
    AGACTATCCT TAGGGACAAC AAGAAGATTG TCGATGTTGT TTGAATAATT 
    ACTATGACAA TGTATGTATC ATAATATGTA AGAACTAGAA TATTTAATAA 
    AATTTTACCT TTCATTAG

    Gene models with high sequence identity

    1. AT1G69870.1 [+] show detail - nitrate transporter 1.7
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Major facilitator superfamily, general substrate transporter 1e-23
    HMMPanther NITRATE TRANSPORTER (NRT1) 0
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 0
    HMMPfam Oligopeptide transporter 1.5e-70

    See the detailed result >

    AT1G69870.1

    Model type
    Protein coding
    Short Description
    nitrate transporter 1.7
    Curator Summary
    Encodes a low affinity nitrate transporter NRT1.7. Expressed in phloem. Responsible for source-to-sink remobilization of nitrate.
    Computational Description
    nitrate transporter 1.7 (NRT1.7); FUNCTIONS IN: low affinity nitrate transmembrane transporter activity, transporter activity; INVOLVED IN: oligopeptide transport, response to salt stress, nitrate transport, low affinity nitrate transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 1.6 (TAIR:AT1G27080.1); Has 4600 Blast hits to 4423 proteins in 820 species: Archae - 0; Bacteria - 1236; Metazoa - 519; Fungi - 428; Plants - 2212; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR