F23125

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23125

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23125

Determination of introduced cDNA(s)

  • RAFL05-18-I12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-18-I12 - Resource: pda02760

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-18-I12 - full reading 
    GGACCAAGCT GCTTCTTCTC CATCTATCCA ACATCTCAAA TCTCAGTAAT 
    CTTGTTCCTT CGATTCTGTT TTGGACGTTT GTAATGGATT CTCAGGACAT 
    CAGATACCGC GGCGGAGACG ACAGAGACGC TGCAACGACG GCTATGGCCG 
    AGACAGAGAG GAAAAGCGCT GACGACAACA AAGGAAAACG CGATCAAAAG 
    AGGGCGATGG CGAAACGTGG TCTCAAGTCT CTGACGGTAG CGGTTGCGGC 
    TCCTGTGCTC GTGACGCTCT TCGCTACGTA TTTCCTCGGC ACAAGCGACG 
    GATACGGGAA TCGAGCTAAG TCCTCGTCGT GGATCCCACC TCTGTGGCTC 
    CTACACACAA CGTGTCTCGC TTCTAGTGGT CTGATGGGTT TGGCTGCGTG 
    GCTTGTATGG GTTGACGGTG GCTTCCACAA GAAGCCCAAT GCTCTGTATC 
    TTTACTTAGC TCAGTTTTTG CTCTGTTTGG TTTGGGATCC GGTTACGTTC 
    CGCGTCGGGT CGGGAGTAGC GGGGCTTGCG GTGTGGTTGG GTCAATCGGC 
    TGCGTTATTC GGATGCTACA AGGCCTTTAA TGAGATAAGT CCGGTCGCTG 
    GTAATCTGGT AAAGCCGTGT TTGGCTTGGG CTGCCTTTGT AGCCGCTGTT 
    AATGTAAAGC TTGCAGTCGC GTGAGATCTG TAAACGCTAT ACGATGATGT 
    TTGTAGAGTC TGAGTCATAT GAGTGTTTCT TGTTGTTTTT GTTTTTTGTG 
    ATATATACCA TAAAAGATGT CTTTGCGATC CAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT2G47770.1 [+] show detail - TSPO(outer membrane tryptophan-rich sensory protein)-related
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther TspO/MBR-related protein 8.9e-27
    HMMPfam TspO/MBR-related protein 2.2e-21

    See the detailed result >

    AT2G47770.1

    Model type
    Protein coding
    Short Description
    TSPO(outer membrane tryptophan-rich sensory protein)-related
    Curator Summary
    Encodes a membrane-bound protein designated AtTSPO (Arabidopsis thaliana TSPO-related). AtTSPO is related to the bacterial outer membrane tryptophan-rich sensory protein (TspO) and the mammalian mitochondrial 18 kDa Translocator Protein (18 kDa TSPO), members of the TspO/MBR domain-containing membrane proteins. Mainly detected in dry seeds, but can be induced in vegetative tissues by osmotic or salt stress or abscisic acid treatment. Located in endoplasmic reticulum and the Golgi stacks.
    Computational Description
    TSPO(outer membrane tryptophan-rich sensory protein)-related (TSPO); CONTAINS InterPro DOMAIN/s: TspO/MBR-related protein (InterPro:IPR004307); Has 567 Blast hits to 567 proteins in 188 species: Archae - 24; Bacteria - 226; Metazoa - 151; Fungi - 6; Plants - 53; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR