F23148

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23148

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23148

Determination of introduced cDNA(s)

  • RAFL16-66-K19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-66-K19 - Resource: pda10159

    full reading [+] show sequence

    Nucleotide sequence: RAFL16-66-K19 - full reading
    CTTAGCCAAC AAAAAATGGC AGAACTTATT CCTTGGTACT ACACTTCAGG 
    GTCAGGGATC GTACTTGTAC TTCAAACCAT TTTTCTCTTC TCGATCGTAC
    GTGCTGATTT ACCAGGCTCA TGGGAACTCA TTGTACAAGA CGCCGGTATA
    GCTTCTATGC ACACGGCGGT GACCCGGTTC AACACGGTCA TCCTTCTAGA
    CCGAACTAAC ATCGGACCGT CGAGAAAGGC TCTTGACCGT CACCGGTGCC
    GGAGAGACCC AAAAGACGCC GCTTTGAAAC GCGATTGTTA CGCTCACTCG
    GTTCTGTTCG ACCTTGGTAC AAATCAGATC AGACCACTGA TGATACAAAC
    CGACACGTGG TGCTCGTCGG GCCAGTTTTT ATCCGACGGA TCGTTGCTAC
    AAACGGGTGG GGATAAAGAC GGGTTTAAAA AGATACGTAA ATTCGAACCC
    TGTGACCCGA ACGAAACGTG CGATTGGGTG GAGCTTCAAG ATACCGAATT
    GATAACCGGA CGCTGGTACG CTTCTAACCA GATATTACCG GATGGTTCGG
    TTATCATCGT CGGTGGTAGA GGAACTAATA CGGTTGAGTA TTACCCTCCA
    CGCGAAAACG GTGCCGTTCC GTTTCAGTTT CTTGCTGACG TGGAAGACAA
    ACAAATGGAT AATCTCTATC CGTACGTTCA TCTCCTCCCC GACGACGACG
    GTGGCAATCT CTTCATCTTC GCCAACAGTC GCGCCGTTAA ATACGATCAC
    CGGATAAACG CCGTCGTGAA AGAGTATCCA CCGTTAGACG GTGGTCCGAG
    GAATTATCCG TCAGGTGGAT CATCGGCGAT GCTAGCTATC CAAGGAGATT
    TCACCACAGC GGAGATTCTA ATCTGCGGCG GAGCACAATC CGGAGCCTTC
    ACAGCGCGTG CAATTGATGC TCCGGCGCAT GGAACCTGCG GACGAATCGT
    AGCTACCGCG GCGGATCCTG TTTGGGTGAC GGAGGAGATG CCGTTCGGGA
    GAATCATGGG AGATATGGTG AATTTACCGA CGGGAGAGAT TCTGATCATA
    AACGGAGCTC AAGCCGGAAG CCAAGGATTC GAAATGGGAT CCGATCCGTG
    TTTATACCCG CTTTTATACC GACCCGATCA ACCAATTGGT TTACGATTCA
    TGACGTTGAA CCCAGGAACT GTACCGAGAA TGTACCATTC CACGGCGAAT
    CTTTTACCGG ACGGTAGAAT TCTTCTCGCC GGAAGCAATC CTCACTATTT
    CTACAAATTC AACGCCGAAT TCCCAACGGA GCTACGGATC GAAGCGTTTT
    CACCGGAGTA TCTGTCACCG GATCGAGCTA ATCTCCGACC AGAGATCCAA
    GAAATCCCGC AGATCATACG GTACGGAGAG GTTTTCGACG TGTTCGTGAC
    CGTGCCGTTG CCGGTGGTGG GGATAATTCA GATGAATTGG GGAAGTGCGC
    CTTTTGCGAC TCATTCGTTT TCTCAAGGTC AACGGCTCGT TAAGTTGACC
    GTTGCTCCGT CTGTGCCTGA CGGAGTAGGT CGTTATAGGA TTCAGTGTAC
    GGCTCCACCT AACGGCGCCG TTTCTCCGCC TGGGTATTAT ATGGCCTTCG
    CTGTTAACCA GGGAGTTCCT AGCATTGCTC GATGGATACG AATAGTTTCT
    TGATTTAAAA CCAGAGGAGA TATTTAAAAT GTTAATTTGT TAAATAGTTA
    AACACATCAT GTAATATAAA TATTTTCATG GAAAAACTTA CTCCGCAAAG
    T

    Gene models with high sequence identity

    1. AT3G53950.1 [+] show detail - glyoxal oxidase-related protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Galactose oxidase, beta-propeller 1.4e-91
    Gene3D Immunoglobulin-like fold 4.2e-19
    HMMPfam Glyoxal oxidase, N-terminal 5.5e-109
    HMMPfam Domain of unknown function DUF1929 2.3e-24
    superfamily Galactose oxidase/kelch, beta-propeller 3.7e-41
    superfamily Immunoglobulin E-set 3.6e-27

    See the detailed result >

    AT3G53950.1

    Model type
    Protein coding
    Short Description
    glyoxal oxidase-related protein
    Computational Description
    glyoxal oxidase-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Galactose oxidase, beta-propeller (InterPro:IPR015916), Immunoglobulin E-set (InterPro:IPR014756), Glyoxal oxidase, N-terminal (InterPro:IPR009880), Domain of unknown function DUF1929 (InterPro:IPR015202); BEST Arabidopsis thaliana protein match is: glyoxal oxidase-related protein (TAIR:AT1G75620.1); Has 849 Blast hits to 839 proteins in 169 species: Archae - 0; Bacteria - 325; Metazoa - 1; Fungi - 246; Plants - 262; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR