F23203

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23203

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F23203

Determination of introduced cDNA(s)

  • RAFL09-97-L12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-97-L12 - Resource: pda09139

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-97-L12 - full reading 
    ATCGATTGAG CTTTCTACTT GAAAACCATC TTTTCCGATC TATCGAATCG 
    GAGCGGCGAA GGAAGGAGAA TGGGTGTCCG TACAATATCT CAGGAGGCAT 
    TCGACGATCT GGTTAGGGAA AATGTTGAAG ATCTTGGTAT GGATCCCTCC 
    GAAGCTCTCG AAGACGCTCT CTACACTCTC AAGCTCCAAG GCGTCGATCT 
    CTTTGGGATC ATTACATGTG TTCCTGGAGA AAGTAGCGTT AAGGACAATC 
    CGGTGATTGC TTGTTTAGAT AGACTAAAAG AATTCGACAG TGTTTCAATA 
    GACGGACCTC TTCGAGATGA GGTTTTCGAT GAGATATCGA GTTTGTTCAA 
    GAATCTCAAT GAGCTTTGTA GCAGCCAAGA ATCAGGGAAC GCTGCAATTG 
    CGACAAAACA TGGTGCTGTG GATTTAACTT GCTCGATTTG TTCCAAAATC 
    AAGATATCTA CTAGAAGTAA TCGTGTTCTT GTTCCTTGCT TTAAGGCTTT 
    GGCTGTGTTG ATCCGTGACA TTCAGAGCAC AGAGAGATTC AGGAATTGTA 
    CTGGACCAAA TATCGTTGTT GATCTCTTAA ATGATTCCAG CTCCGATTCT 
    GATTTGTTAG ATGCTGGTTT TGCGGTTGTT GCTGCTGCAG CAACTGGTAA 
    TGAAGTTGTG AAACAGTTAT TCATGGAACT GAAAATCGAT GAACTTATTC 
    TGCAAGTGTT GAATAGAGAG AGTAAAACTA CCATTAGAGC TCTGTACGAT 
    GCTATTTGTG CTCTTTTGAC TCCAGATGAC TTCCGTGTTG TTGCTTCCCA 
    AGTTTATGGT TATGCACGAA CTTTTGCCAA ATTAGGGATT GCGACAGCCC 
    TCACTGAAGC ATTACAGGCA GGGATTGGCT CTGATAGTTT GGTGTCAGCA 
    AGTACTGCGT TAAAAGCAAT TGCTGTCAAT GATGAAATAT GTAAATCTAT 
    TGCTGAATCC GGTGGAATAG ATACACTTCT TCGGTGTATT GATGATAGCG 
    GTGAGCAAGG CAACAAAACT GCTGCTAAGA CATGTTGTTC CCTGTTGTCT 
    AAGTTGGCAG GAAGTGACTC TAACAAGAGT ACCATAGTTG AGAAGCAAGG 
    TCTGGACAAG CTAATCACAC TCGCACTACG ATTCTCTGAT GATCCTCTAG 
    TCATACAAGA GGTGATGTTG ATAATCTCTA TAATCTGTCT GAGATCACCA 
    GACCACGCAG CCAAGGCTAT AGAAGCTGGA GCTGGTGATC TAGCGGTCCA 
    AGCAATGAAG AGGTTCCCAG TAGCTGCTCA AATGCAGAGA AACGCTTGCA 
    ACATGATACG GAACATTGCT GTCAGAAGTG CAGAGAACAG AACTATTCTG 
    CTTGCTAATG GAATCGAGAA GCTGATAAGA ACTGCTAAAG CCAACAATGA 
    GACATGCAGA GCCGCTGCAA CTGATGCACT GAGAGACCTT GGCCTTGATA 
    ACTACAATAA CTAAGGTCAA TCTTTCTCCA TTGGTTGGTA CTCGCAACAA 
    CCGGAATGAA TCCAGTTTTT TTTTTCAAAA ATTTCATAAA CAGTTTGCAT 
    TGAGTTCTCT CTTTTGGGTA GAAGGCATTC CGATCTAGTC TTTTTTGCAA 
    CGATTGCTTT TGTTCGAATG CTTGAACATG TAGTAAAATT GAAAGGAATT 
    GATTGAAAAT TTCGGT

    Gene models with high sequence identity

    1. AT4G33945.1 [+] show detail - ARM repeat superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Armadillo 0.16
    HMMSmart Armadillo 74
    HMMSmart Armadillo 22
    HMMSmart Armadillo 31
    superfamily Armadillo-type fold 2e-34
    Gene3D Armadillo-like helical 5.3e-19
    HMMPanther gb def: Deoxyribonuclease II precursor (EC 3. 0.00039
    HMMPanther Deoxyribonuclease II 0.00039
    HMMPanther UNCHARACTERIZED 1.1e-85

    See the detailed result >

    AT4G33945.1

    Model type
    Protein coding
    Short Description
    ARM repeat superfamily protein
    Computational Description
    ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR