F23206

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23206

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23206

Determination of introduced cDNA(s)

  • RAFL05-15-A10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-15-A10 - Resource: pda07321

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-15-A10 - full reading 
    GCTCTCACTC CCAAAACGAT GTCGTCTCTA TCTCGCGTTC TCCGTGGCAC 
    CTTCAACACT TGCCCGATCC GCCGTTTTTC CTCCGCCGCC ACCGTAGTCT 
    CCGAACCCAC CGCAGTCACT GCCGCAATCT CGCCTCCTCA AAAGTCACTA 
    ACCAGTCTCG TGAATGGCGA ACGAAACCCC AAACGGATCG TGGAGAAATT 
    CAAGAAGGCA TGTGAGTCGG AGCGGTTCCG GACCAACATA GCCGTGTACG 
    ATAGAACCGT GCGCCGTCTC GTAGCCGCAA AGAGATTACA CTATGTCGAA 
    GAGATTTTGG AGGAGCAGAA GAAGTACCGC GACATGTCAA AAGAGGGATT 
    CGCGGCGAGG ATCATTTCTC TGTATGGAAA AGCCGGCATG TTTGAAAATG 
    CACAGAAGGT GTTCGAAGAA ATGCCAAACA GAGACTGCAA GAGGTCAGTG 
    TTGTCCTTCA ATGCCTTGCT TAGTGCATAT AGACTTTCCA AGAAATTCGA 
    TGTGGTTGAA GAACTTTTCA ATGAGTTACC TGGAAAGTTA TCAATCAAAC 
    CAGATATTGT ATCTTACAAT ACTTTGATTA AGGCATTGTG TGAGAAGGAT 
    TCTTTACCTG AAGCTGTTGC ATTGCTTGAT GAGATTGAGA ACAAGGGACT 
    AAAACCTGAT ATAGTTACAT TCAACACACT TTTACTGTCT TCGTATCTAA 
    AGGGACAGTT TGAGCTAGGG GAAGAGATAT GGGCTAAAAT GGTGGAGAAG 
    AATGTAGCAA TAGACATCAG GACTTACAAT GCTAGGCTGC TTGGATTAGC 
    CAATGAGGCG AAATCGAAAG AGCTAGTAAA TCTCTTTGGA GAACTTAAGG 
    CTAGTGGTCT CAAACCTGAT GTTTTCAGTT TCAATGCTAT GATTAGAGGA 
    TCTATCAACG AAGGAAAAAT GGACGAAGCT GAAGCGTGGT ACAAAGAAAT 
    TGTGAAGCAT GGTTATCGTC CTGATAAAGC TACCTTTGCT TTATTGCTTC 
    CTGCTATGTG TAAAGCAGGT GACTTTGAGT CTGCGATTGA GCTCTTCAAG 
    GAGACATTCA GTAAGCGGTA TCTTGTCGGT CAAACAACGT TGCAGCAGTT 
    AGTTGATGAA TTGGTGAAAG GGTCTAAGAG AGAAGAAGCT GAGGAGATTG 
    TGAAGATTGC AAAGACCAAT GATTTCTTAA AGTTGAAGCT AAATTTGCCG 
    TCCCAGGAAG AGTAAGTCAT TTGCTACTCT CTCACTAAGT GTCTCGTTGA 
    ATTGTGTCTG AGCAGCTTAA GCTATATGTA TTTGCTGGTG TTGCTTTGTG 
    GCTTTTCTAC TTCTCTAAAC TTTCCTCTGT GGAAGTAAGA CTTGTTTCTT 
    TCTATGTAGT TTCGCTTATT TCACTGGTGC AAAAAACAGC ATGTAGTCGA 
    GGTTTAGGCA GAAGAAACCC TACAAATTTA ATAAATTTTG GTTATTTGTT 
    TAAAAAAAAA AAAAAAG

    Gene models with high sequence identity

    1. AT1G55890.1 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
      E-value: 0; Score: 99.93

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Pentatricopeptide repeat 8.068
    ProfileScan Pentatricopeptide repeat 12.299
    ProfileScan Pentatricopeptide repeat 7.289
    ProfileScan Pentatricopeptide repeat 8.627
    ProfileScan Pentatricopeptide repeat 9.493
    ProfileScan Pentatricopeptide repeat 11.981
    ProfileScan Pentatricopeptide repeat 9.229
    HMMTigr Pentatricopeptide repeat 0.11
    HMMTigr Pentatricopeptide repeat 0.0074
    HMMTigr Pentatricopeptide repeat 5.4e-08
    HMMTigr Pentatricopeptide repeat 0.0082
    HMMTigr Pentatricopeptide repeat 0.0011
    HMMTigr Pentatricopeptide repeat 5e-07
    HMMTigr Pentatricopeptide repeat 0.022
    HMMPfam Pentatricopeptide repeat 0.00013
    HMMPfam Pentatricopeptide repeat 0.051
    HMMPfam Pentatricopeptide repeat 9.3e-06
    HMMPfam Pentatricopeptide repeat 0.21
    HMMPfam Pentatricopeptide repeat 1.8e-05
    HMMPfam Pentatricopeptide repeat 0.02
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 6.1e-90
    superfamily TPR-like 5.8e-17

    See the detailed result >

    AT1G55890.1

    Model type
    Protein coding
    Short Description
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Computational Description
    Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G13160.1); Has 41765 Blast hits to 13385 proteins in 277 species: Archae - 5; Bacteria - 48; Metazoa - 331; Fungi - 377; Plants - 39933; Viruses - 0; Other Eukaryotes - 1071 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR