F23210

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23210

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23210

Determination of introduced cDNA(s)

  • RAFL14-06-B12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL14-06-B12 - Resource: pda18109

    full reading [+] show sequence

    Nucleotide sequence: RAFL14-06-B12 - full reading
    ATTCAGTCGG ACCAACTTGT GACCGAAGAA AGCAAATTGA GACTACGCAC 
    CAACTAGTCC TTTGGTTTGT ATCTTAAGAT AAAGGTTTCT TTTATGGACG
    GTTCTTCGTT TCTCGACATC TCTCTCGATC TCAACACCAA TCCTTTCTCC
    GCAAAACTTC CGAAGAAGGA GGTCTCAGTT TTGGCTTCTA CTCACTTAAA
    GAGGAAATGG TTGGAGCAAG ACGAGAGCGC AAGTGAGTTA CGAGAGGAGC
    TAAACAGAGT TAATTCAGAG AACAAGAAGC TAACAGAGAT GTTAGCTAGA
    GTCTGTGAGA GCTACAACGA ACTACATAAT CATTTGGAGA AGCTTCAGAG
    TCGCCAGAGC CCTGAAATCG AGCAGACCGA TATACCGATA AAGAAAAGAA
    AACAAGACCC GGATGAGTTC TTAGGCTTTC CTATTGGACT CAGTAGTGGA
    AAAACTGAGA ACAGCTCCAG CAACGAAGAT CATCATCATC ATCATCAGCA
    ACATGAGCAG AAAAATCAGC TTCTTTCATG TAAAAGACCA GTCACTGATA
    GCTTCAACAA AGCAAAAGTT TCGACTGTCT ACGTGCCTAC TGAAACATCG
    GACACAAGCT TGACAGTTAA AGATGGATTT CAATGGAGGA AATACGGACA
    AAAGGTTACA AGAGACAACC CGTCACCTAG AGCTTACTTT AGATGCTCGT
    TTGCACCGTC TTGTCCAGTA AAAAAGAAGG TACAACGCAG CGCAGAGGAT
    CCATCTTTAC TTGTAGCGAC ATACGAAGGG ACGCATAACC ACTTGGGTCC
    AAATGCTTCT GAAGGGGATG CTACAAGCCA GGGTGGGTCA AGCACAGTGA
    CTTTGGATCT GGTTAATGGC TGTCATAGAC TAGCGTTGGA GAAAAACGAA
    AGGGATAATA CGATGCAAGA GGTTCTGATT CAACAAATGG CGTCATCGTT
    AACAAAAGAT TCGAAATTTA CAGCTGCTCT TGCTGCTGCT ATATCTGGGA
    GGTTAATGGA GCAATCTAGA ACATGAACGT TTTTAGTGAA TGTATTGTTT
    TTGTTTGTTT AGAATGATTC TTCGTTTTCG AATTGTGTCT TTCGATTAGG
    AGATAAAAGA TGTATATAAA TATTATAAGT AGATGAAGAA ATCGTATAAG
    TATTCGAGAA ACTTTAAATG TACGAATTCT ATATAACCAG TTAGATGTCG
    TCTGAATACT GTATATGAAA ATTTTGAAAT AAATGATGTG GCTAAAAAAA
    AAA

    Gene models with high sequence identity

    1. AT4G31800.1 [+] show detail - WRKY DNA-binding protein 18
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart DNA-binding WRKY 1.4e-33
    Gene3D no description 2.3e-22
    ProfileScan DNA-binding WRKY 25.499
    HMMPfam DNA-binding WRKY 4.1e-27
    Coil coiled-coil 0

    See the detailed result >

    AT4G31800.1

    Model type
    Protein coding
    Short Description
    WRKY DNA-binding protein 18
    Curator Summary
    Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Constitutive expression of WRKY18 enhanced resistance to P. syringae, but its coexpression with WRKY40 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.
    Computational Description
    WRKY DNA-binding protein 18 (WRKY18); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 60 (TAIR:AT2G25000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR