F23409

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23409

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23409

Determination of introduced cDNA(s)

  • RAFL09-84-G04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-84-G04 - Resource: pda09966

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-84-G04 - full reading 
    ATTGGTTAGT TTTGAGAGCA GCAGCGTATT CTTACACAGT TCTCATATGT 
    TTAACTCCAT TCACTCTCTC AAAAGGTTCC CATCTTTATC AAAAGACTTG 
    CTAAAATCTT CTCTTTCTTT CTCCTTTCAT CACACTCTTG AGTCCTTGTC 
    TCTGTTTTTA GTCACCTGAA GAAAAAATAT ATGGAGAACG GAGAATCTAA 
    CCAAGAAAAT CTCAAATCTC TCAACCACGA CGAATCGCTT AAGAAGCCAT 
    CTGCTTCCTC CGTCGTTGTA GATAGGTTAA AACGTGATGA ATGGAGCGAA 
    GGAGCTGTTT CGACTTTACT CGAAGCTTAT GAGTCAAAAT GGGTTCTCAG 
    AAACAGAGCC AAGCTTAAGG GACAAGACTG GGAAGACGTG GCTAAACACG 
    TGTCCTCACG CGCCACTCAC ACCAAGTCAC CAAAGACTCA GACTCAGTGC 
    AAGAACAAGA TCGAGTCCAT GAAGAAACGG TACCGTTCTG AGTCCGCTAC 
    TGCTGATGGC TCCTCTTGGC CTCTTTATCC TCGTCTTGAT CATCTCCTAC 
    GTGGAACTCA GCCTCAGCCT CAGCCTCAAG CTGTTCTGCC TCTGAATTGC 
    TCTGTTCCTC TGCTCTTACT TGAGCCGCCG TTGCCTGCGG TGGCTCATCC 
    GCCGCAGATT TCTTACGGAT CCAACGGCGT CGGCAAGATT CCTAAGGAAG 
    ACGGATTCAA GCCGGAGAAC AAACCGGAAA AAGATGCGGA GATGGATACA 
    GACAGTAGTA CGCCTGTGGT TAAAACGAAG GTGAGAGGGA AGAAAGTGAA 
    GAGAAGATAT AAAGAAGAGA AGGAAGAGAT CGCCGGAAGT ATACGGTGGT 
    TAGCGGAGGT GGTGATGAGA TCAGAGAGAG CAAGAATGGA GACGATGAAA 
    GAGATAGAGA GAATGAGAGC TGAAGCTGAA GCTAAGAGAG GAGAATTGGA 
    TTTGAAACGG ACGGAGATAA TGGCGAATAC TCAGCTAGAG ATTGCTAGAA 
    TCTTTGCTGC TGCAGCTTCT TCTGGACAGA ACAAAGGTGT TGATTCTTCA 
    TTAAGGATCG GAAGAAATTG AGTTCTGCTT TTTATATTGG AGACTCAAGA 
    TGTTGTGTGT ACATACCAAG TGTTGTTTTG TCAAAATTTC TCAGAGAGAG 
    ACCAATAATT GTTTCCTGGG GTAGATGGCG ATTTCCACAT TTCTACCAGC 
    AAATGTATGC TTTTGCCATA TGAATATCAT CAATCTTTAG C

    Gene models with high sequence identity

    1. AT3G54390.1 [+] show detail - sequence-specific DNA binding transcription factors
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0

    See the detailed result >

    AT3G54390.1

    Model type
    Protein coding
    Short Description
    sequence-specific DNA binding transcription factors
    Computational Description
    sequence-specific DNA binding transcription factors; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: aspartate/glutamate/uridylate kinase family protein (TAIR:AT3G10030.1); Has 350 Blast hits to 341 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 2; Plants - 343; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR