F23411

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23411

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23411

Determination of introduced cDNA(s)

  • RAFL09-69-N14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-69-N14 - Resource: pda08696

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-69-N14 - full reading 
    ATCGCTGTCT TCAGTCTCGC TTCTTTGTAA ACTGTAAAGG ATCAAGCTTT 
    TCTATTCAGA TCAAATCCAC TTCACTATAC CCTTTTTTAG TTTCGTTAAC 
    CCAGCTCAAA TCCGAGATGA GATATCAACA ATGGCGATTG ATGCTTCTTC 
    GAAGCTACCA TCGTTCTCAT CTTCCTTATC TATCTCCTTG TTCTCAGGTA 
    ACCTCCATTT CATCGCGATC TTTCTCTTCT TTCATTCACC CTGGGATCGG 
    AGCTTTGCAA CAAAGTGAAC AACTTTGTCC CTTACGATCC CCAATGACGA 
    GCTCTGGCAA CTTAGTGAAA TCAGTGGGTC GAAGCTTCTC GTCCGAGCCT 
    GCGGTTGAAG AGAAATCTTC TGCTGAGGCT ACCGTGATTG ATATTTTTAG 
    TAGATTGAGT GGTGAGGATG AGATTAGGAA GGAGTTGGAA TCGAGTGGTG 
    TAGTGATTAG CCAAGATTTA GCTTTGAAGG TTTTGAGAAA GCTCGAATCA 
    AACCCTGATG TTGCCAAAAG TTTTTTCCAG TGGATTAAGG AGGCTTCTCC 
    TGAGGAACTT AGCTCGAAGA ACTATAACAT GATGCTGCGG ATTCTGGGTG 
    GTAATGGACT TGTTGATGAG TTTTGGGGGT TGGTTGATGT GATGAAGAAG 
    AAAGGGCATG GTTTATCGGC TAATGTTAGA GATAAAGTGG GTGACAAATT 
    TCAGAAAGAT GGGCTGGAGA GTGATTTGCT GAGGCTGAGA AAGCTTTTTA 
    CTTCAGATTG TTTAGATAAT TCGGCGGAGA ATGTTTGCGA TAGGGTGTGT 
    AAGATTGTGA TGAAGGAAGA ATGGGGTGAT GATGTAGAGA AACGGGTAAG 
    AGATTTGAAT GTTGAGTTTA AGAGTGATTT AGTGAAGATG ATTGTGGAAC 
    GTCTTGATGT TGAACCCAGG AAAGCTTTGT TGTTCTTCCG GTGGATTGAT 
    GAGTCTGATC TCTTTAAGCA TGATGAGAAA ACCTATAATG CTATGGCTAG 
    GGTTTTGGGA AAAGAGAAGT TTCTTGATAG ATTTCAGAAC ATTGTAGTAG 
    AAATGAGGAG TGCTGGTTAT GAAGTGGAAA TAGAGACTTA TGTTAGAGTT 
    TCAACGAGGT TCTGCCAGAC TAAATTGATC AAGGAAGCTG TTGACTTGTT 
    TGAGATTGCA ATGGCAGGTA GTAGTAGTAG TAACAACCCC ACCCCACACT 
    GCTTCTGTTT GTTGCTCAAG AAAATTGTCA CTGCCAAGAT TCTAGATATG 
    GATTTGTTTT CAAGAGCTGT GAAAGTTTAT ACCAAAAATG GTAATGCTTT 
    GACGGATTCC TTGCTGAAAT CTGTCTTAAA GTCCTTGAGA AGCGTGGATA 
    GGGTTGAACA GAGCAATGAG CTGTTGAAAG AAATGAAGAG AGGAGGCTAT 
    GTTCCTAGTG GTGATATGCA GAGCATGATT GCATCAAGTC TTAGTCGTAA 
    GGGAAAGAAG GACGAAGCTG ATGAATTTGT AGACTTTATG GAATCATCCG 
    GAAACAATCT AGATGACAAG GCAATGGCGT CTCTTGTTGA AGGGTATTGT 
    GATTCCGGGA ATCTTGATGA AGCTTTAGTG TGTTTCGAGA AAATGGTTGG 
    AAACACGGGA GTCTCCTATG CTGATTATTC ATTTGAGAAG TTGGTTCTTG 
    CTTATTGCAA CAAGAATCAA GTAAGAGATG CATACAAGCT TTTGAGTGCA 
    CAAGTAACGA AAAATCAACT GAAACCTCGT CATAGCACAT ACAAAAGCTT 
    GGTGACGAAT CTGTTGACGA AGAAGATTGC AAGGGATGGT GGGTTTGAAG 
    AAGCTTTGAG TCTTCTACCG ATAATGAAAG ATCACGGGTT CCCTCCTTTC 
    ATTGACCCTT TCATGAGTTA CTTCTCATCA ACTGGAAAAA GCACTGAAGC 
    TCTCGGTTTT TTGAAGGCTA TGACCTCGAA TAACTTTCCA TATATATCAG 
    TGGTTCTGCG TGTATTCGAA ACTATGATGA AGTCTGCAAG ACACAGTGAA 
    GCACAAGATT TACTCTCTCT GTGCCCAAAC TATATCCGTA ATAATCCGGA 
    TGTTCTAGAA CTCTTCAATA CCATGAAACC CAACGAATCT GCTGTAGAAA 
    AACCTTTGGC TGCTTCTGCT TAGCTCCAGT TTTAGTTTAC ATTCCTTCAA 
    GTCTTTTTGG TTTCTGGGCA TTTGATTCAA ATAATTTGGC CAGAATATTT 
    CCTGCTGTTC CCTTTTGTTT ACATGTATCA CTCACCAGTC ACCAGTTAAC 
    TTTCTTCATC AACCTGGTGC ACTGGCAAAA TAATTTTAAG GTACTATGTT 
    TTTTATATTC CACTTGCTTA TCATCTG

    Gene models with high sequence identity

    1. AT5G15980.1 [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
      E-value: 0; Score: 99.96

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Pentatricopeptide repeat 0.079
    HMMPfam Pentatricopeptide repeat 0.00061
    HMMTigr Pentatricopeptide repeat 0.00092
    HMMTigr Pentatricopeptide repeat 0.05
    HMMTigr Pentatricopeptide repeat 0.11
    HMMTigr Pentatricopeptide repeat 0.31
    HMMTigr Pentatricopeptide repeat 0.092
    superfamily TPR-like 3.8e-06
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1.4e-58
    ProfileScan Pentatricopeptide repeat 8.473
    ProfileScan Pentatricopeptide repeat 8.813
    ProfileScan Pentatricopeptide repeat 5.536
    ProfileScan Pentatricopeptide repeat 7.947
    ProfileScan Pentatricopeptide repeat 8.835
    ProfileScan Pentatricopeptide repeat 6.697
    ProfileScan Pentatricopeptide repeat 7.443
    ProfileScan Pentatricopeptide repeat 8.177

    See the detailed result >

    AT5G15980.1

    Model type
    Protein coding
    Short Description
    Pentatricopeptide repeat (PPR) superfamily protein
    Computational Description
    Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G02490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR