F23420

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23420

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23420

Determination of introduced cDNA(s)

  • RAFL09-07-O12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-07-O12 - Resource: pda05217

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-07-O12 - full reading 
    AATCACTTCA CTCTCTCTAA TCAAAAAGCT TTTAACCTCA GCCGTTAAAT 
    CTTTCTCCGA TCATGCCGAC CAGAAACATC GCCATTGGTG GAGTCCAAGA 
    AGAGGTCTAT CACCCCAACG CACTTAGGGC GGCGCTCGCT GAGTTTATCT 
    CGACTTTGAT CTTCGTCTTC GCCGGCTCAG GCTCCGGAAT TGCTTTCAAC 
    AAGATCACTG ACAATGGAGC AACCACTCCT TCCGGCCTCG TCGCCGCTGC 
    CTTAGCTCAT GCTTTCGGTC TCTTTGTCGC TGTCTCTGTT GGCGCTAACA 
    TTTCCGGTGG CCACGTTAAC CCTGCCGTTA CCTTCGGTGT CTTACTCGGT 
    GGTAACATCA CTCTCCTCCG TGGTATTCTC TACTGGATTG CTCAGCTTCT 
    TGGCTCCGTC GCCGCTTGTT TCCTCCTTAG CTTTGCCACC GGTGGCGAGC 
    CAATTCCAGC GTTCGGTCTC TCTGCCGGAG TCGGATCATT AAACGCTCTC 
    GTCTTCGAGA TCGTGATGAC CTTCGGGCTC GTCTACACCG TCTACGCCAC 
    AGCCGTTGAC CCCAAGAACG GTAGTCTCGG AACAATCGCA CCAATCGCCA 
    TAGGTTTCAT CGTTGGAGCT AACATCCTCG CCGGTGGAGC TTTCAGCGGA 
    GCTTCCATGA ACCCAGCCGT TGCTTTCGGA CCAGCCGTCG TAAGCTGGAC 
    GTGGACCAAC CACTGGGTTT ACTGGGCTGG TCCTCTTATT GGTGGTGGAC 
    TCGCCGGAAT TATCTACGAC TTTGTCTTCA TCGATGAAAA TGCCCACGAG 
    CAATTGCCTA CCACCGATTA CTGAAGACGT CAAATTCAAC GTTGTTAATC 
    TGATGAATTT TTCGTGATTT GCTTTTTTAA TTTGCATCGT AATGGGTTTC 
    TGGCCGTTGG ATCATTTTTA GATGAATCTT TGTCTATTGA TTGATCATTT 
    ATGTGTCTTT GGGTTTGTTG TTGGAGTTGT AATATCTCTG GAAGGCTTTT 
    GTGCAATTGT ATTGTACGGT TTAATAACTA TAATTGAGAA AACCAGGGAA 
    TGTGAATTAC G

    Gene models with high sequence identity

    1. AT3G26520.1 [+] show detail - tonoplast intrinsic protein 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Major intrinsic protein, conserved site 0
    HMMPfam Major intrinsic protein 4.8e-76
    FPrintScan Major intrinsic protein 4.8e-52
    FPrintScan Major intrinsic protein 4.8e-52
    FPrintScan Major intrinsic protein 4.8e-52
    FPrintScan Major intrinsic protein 4.8e-52
    FPrintScan Major intrinsic protein 4.8e-52
    FPrintScan Major intrinsic protein 4.8e-52
    HMMTigr Aquaporin 6e-68
    HMMPanther TONOPLAST INTRINSIC PROTEIN 1e-127
    HMMPanther Major intrinsic protein 1e-127
    Gene3D Major intrinsic protein 1.1e-62
    superfamily Major intrinsic protein 5.5e-64

    See the detailed result >

    AT3G26520.1

    Model type
    Protein coding
    Short Description
    tonoplast intrinsic protein 2
    Curator Summary
    gamma tonoplast intrinsic protein 2 (TIP2). expressed throughout the plant and transcript level is increased upon NaCl or ABA treatments. NaCl stress-sensitive yeast mutant strains exhibit more resistance to salt when expressing this protein.
    Computational Description
    tonoplast intrinsic protein 2 (TIP2); FUNCTIONS IN: water channel activity; INVOLVED IN: response to salt stress, transport, defense response to bacterium, hydrogen peroxide transmembrane transport, water homeostasis; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: gamma tonoplast intrinsic protein (TAIR:AT2G36830.1); Has 10870 Blast hits to 10853 proteins in 2179 species: Archae - 81; Bacteria - 5139; Metazoa - 1484; Fungi - 429; Plants - 2489; Viruses - 0; Other Eukaryotes - 1248 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR