F23444

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23444

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23444

Determination of introduced cDNA(s)

  • RAFL04-14-K03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-14-K03 - Resource: pda16968

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-14-K03 - full reading 
    GGGTCTCTTT CTCTCTCTGT CTCTAGTCTC TACTCTCGAA CGGGCTAAGC 
    TCAGATCATT ACAAGATTCG CTTTTGTGCT GAACTTGGTC CCATTCATTA 
    GTTATTTGCT TAAAGACAAC ATTTTTATAT GCTTCCGTTA GCTAAATCCA 
    TCACTCCCCC CTTCAATCAT TTCCCTGCTC TGCTGGCCCC AGAAACAGCT 
    TGCTAGGATT CACTACGACG TCGTTTCGGG TTCGTCTCCA GCTGTGGATA 
    ATGGCTATTC TCTGAAATTG ATTCTATTCA CTATTTTGTT ACTGGGGATT 
    TTCTCAGCAA ACCAAAACAG GATTTATTTT TTCTGGGGAT TTCTGAGATT 
    GGAAGAAAAT GTTCAGCTTT TCAAAGAGGC GCATGAGACT TGGCAGAGTT 
    AAGAAGGTAC AGCTCTCGGA TTCTGTTCAA GGATATAAGA GTCCTTTACG 
    AGTGACCAAA CGCGCTGATA GCTCTAGTAA TGAAGCTGCT GTTGCTGCAA 
    CTAGTTATTC TGATGAACTT GATTTCCAGC CTTCATCAGG GAATTCCGAA 
    AATTGGATGG TGTTATCGGT TAATGGCGAA AAACCCGCTC CACGCTTTAA 
    TCATGCAGCG GCGACTATTG GGAACAAAAT GATAGTAGTT GGTGGAGAGT 
    CTGGTAGTGG CTTGTTGGAT GATGTACAGG TGCTTAACTT TGATTCATGT 
    ACATGGTCCA CCGCATCTTC AAAAGTTTAC TTATCGCCGA GTAGTCTTCC 
    TCTCATGATC CCTGCTTGGA AAGGCCATTG CTTGGTCTCT TGGGGTAAAA 
    AAGTGCTGTT GGTGGGTGGA AAAACAGATC CTAGCAGTGA TAGAGTTTCA 
    GTGTGGGCAT TTGATACTGA TTCGGAATGC TGGTCACTAA TGGATGCAAA 
    AGGAGACTTA CCGGTCAGTC GCAGCGGTCA CACAGTGGTG AGGGCTAGTT 
    CGGTATTGAT ACTATTCGGT GGTGAAGACT CTAAGAAGAG GAAACTAAAC 
    GATCTTCATA TGTTTGATCT CAAATCATCC ACATGGCTTC CTCTTAATTG 
    CACAGGAACA CGGCCGTGTG CAAGGTCACA TCATGTAGCC ACGTTATTCG 
    ACGACAAAAT TCTGTTTGTG TTTGGAGGTT CGGGCAAGAA CAAAACACTA 
    AATGACTTAT ACTCACTCGA CTTTGAAACG ATGGTATGGT CAAGAATAAA 
    GATAAGAGGA TTTCACCCAT CACCAAGAGC GGGTAGTTGT GGAGTTCTTT 
    GCGGTACTAA ATGGTATATA ACCGGAGGAG GAAGCAGAAA GAAGAGACAT 
    GCGGAAACAT TGGTCTTCGA TATCCTTAAG GTCGAGTGGT CTGTAGCAAG 
    CATCTCCTCT CAATCTTCTG TCACATCCAA CAAGGGATTT AGTCTAGTTC 
    TTCTGCAACA CAAGGATAAA GATTTCCTTG TAGCTTTTGG AGGAACGAAA 
    AAAGATCCTT CAAATCAGGT CGATGCTTTT ACCATTGACA AGAACAAGAG 
    TGAATCACCA ACACATCCGC AAACAACTTC CAAGAAAAAC CCCGGCCGGT 
    TACTGTTTGG AAAAAGATCT TCTTCCTCGG CAGTTTTAAC CTCTGATGAA 
    TCGGTTAAAG CCTCTTCACA GAGGCTGATT GATTCAGTTG CCAGACAGAA 
    ACTTGCTTCA GCCATTGAAG AGCATGGTGG CTCTGGTAGA AGGTCTTTAT 
    CAGAGATTGC TTTCGGTGAT CATCGTAACC CACCTTCTGG AAATGTCTCT 
    TTGCGTAAAC AGTTTAGCAC CGAAGAGGAA TACAGAGCGG TGATTGAACC 
    CGCAAAGTGT TCAGAAGAAG ACATTTCCGT GCCTCCTCCG ACCACAGATG 
    ACAATACTGG AGGAGCAAAG ATTACAGCAG AGAAAACACT TTCTATGGTT 
    TCTGACCGTG AAATCTTAAG TCTCCAGAAG CAATGCTCTG AAACATATCC 
    TTTAGAAAAC GTTGATGGCG CCTTGATATT CCAAGAAATG GATAATATCA 
    ACTTTGCAGG ATCAGCGTCC TCATCGAGCG TGTACCAATT CCATGAAGCG 
    AAAATGACGG CTCTTATAAG AAGAAATGGG ATTCTGGAAG GGCAGTTAGA 
    AGCAGCATTG GCGGGAAGAG AGGCGGCTGA GAGGAATGTG TCGGTTGCGT 
    TGAGGAGCAA ACAAGAGACT GATAAAAAGT TATCTGACGC CATGAGAGAT 
    GTTGAATTGC TTAAGGAGAA GCTGACCGGG TTAGAGCTCG CTCAAGAGGA 
    AGCTAATAGT TTGTCAAACA TGGTTCACTC CGACAATGTC AGGCTTGAGC 
    ATGATGTAGC GTTCCTCAAA GCTGTCCTAG ACGATACACA AAAGGAGTTG 
    CATTCAACAA GAGGAGTTCT TGCAGGAGAA AGAGCAAGAG CGTTCCAGTT 
    GCAGGTTGAA GTGTTTCATC TGAAGCAAAG ATTACAATCT CTAGAGAACA 
    GAGCTGCTAC ACCCAGAAAG CCTTTCCATG TCTAAACACA GACCAGAGAC 
    AACACGATAA CTTTTATGAC TTCCATTTTG TAGTACTCGA GACATGACTG 
    AATTCATGTG TGTTGTGGAG TAATGTATAA TAGAAGTGAA TTCAGAAAAA 
    AAA

    Gene models with high sequence identity

    1. AT5G18590.1 [+] show detail - Galactose oxidase/kelch repeat superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Galactose oxidase/kelch, beta-propeller 1.8e-38
    Gene3D Kelch-type beta propeller 9.3e-43
    HMMPanther RANGAP1-INTERACTING PROTEIN-RELATED 5.5e-227
    HMMPanther KELCH REPEAT DOMAIN 5.5e-227
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam Kelch repeat type 2 0.00012
    HMMPfam Kelch repeat type 1 1.9e-06

    See the detailed result >

    AT5G18590.1

    Model type
    Protein coding
    Short Description
    Galactose oxidase/kelch repeat superfamily protein
    Computational Description
    Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: acyl-CoA binding protein 4 (TAIR:AT3G05420.1); Has 9365 Blast hits to 4668 proteins in 321 species: Archae - 14; Bacteria - 334; Metazoa - 3669; Fungi - 969; Plants - 2222; Viruses - 6; Other Eukaryotes - 2151 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR