F23510

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23510

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23510

Determination of introduced cDNA(s)

  • RAFL09-41-P11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-41-P11 - Resource: pda09761

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-41-P11 - full reading 
    ATAAAGAAGT AAAGCTTTGC CGGAGATTTA GCAAACACAA ACACAAAAAA 
    CAAAACCAAC TCAGACGAAT GTGATTTTTT CTTCTTGAGT GAATTGTTGT 
    AAAAAAATGA TGATCGGAGA ATCTCATCGT GGTTTTAATC CAACGGTTCA 
    TATTCCTCCA TGGCCACTTT CTGAAGATCT AACGGTGTCT GATATTTACG 
    GAAGTCCAGA CGGAGGAAGT AGTATGATGG AAGCTTTGGC TGAGTTACAA 
    CGTTATCTTC CGTCAAACGA ACCGGATCCG GATTCAGATC CGGATCTCTC 
    GGGTCCGGAT TCACCAATCG ATGCTTATAC ATGCGATCAT TTTCGGATGT 
    ATGAGTTTAA AGTGAGACGT TGTGCTCGTG GCCGGAGCCA TGATTGGACG 
    GAGTGTCCTT ACGCTCATCC CGGAGAAAAA GCTCGCCGTC GTGATCCGAG 
    GAAGTTTCAT TACTCCGGTA CGGCGTGTCC TGAGTTTCGT AAAGGTTGTT 
    GCAAGAGAGG AGACGCATGT GAGTTTTCTC ATGGTGTTTT TGAGTGTTGG 
    CTTCACCCGG CGCGTTACCG GACTCAGCCG TGTAAAGACG GTGGTAACTG 
    TCGCCGTCGT GTTTGTTTCT TTGCTCATTC GCCGGATCAG ATTAGGGTTT 
    TGCCTAATCA AAGCCCTGAT CGTGTTGATT CGTTCGACGT TTTGTCTCCT 
    ACGATTCGTA GAGCGTTTCA GTTTTCGATT TCTCCGTCGT CTAACTCGCC 
    GCCGGTGAGT CCACGAGGTG ACTCGGACTC GTCGTGTTCG TTACTGAGTC 
    GTTCACTCGG GTCTAATCTG GGAAACGACG TCGTTGCGTC TCTCAGGAAT 
    CTGCAACTTA ATAAAGTGAA GTCTTCTCTT TCGTCGTCAT ACAACAATCA 
    AATCGGAGGA TACGGATCCG GATTCGGGTC GCCTCGTGGA TCGGTTTTGG 
    GTCCTGGTTT CCGTAGCTTA CCAACTACAC CGACCCGACC TGGTTTTATG 
    AACATTTGGG AGAATGGCTT GGAGGAAGAA CCGGCGATGG AACGGGTCGA 
    GTCGGGTCGT GAACTGCGAG CGCAGCTGTT CGAGAAGCTG AGCAAAGAGA 
    ATTGCATGGG TCGGATTGAA CCGGATCCGG ATCAGGGAGC GGGTGATACT 
    CCTGATGTCG GGTGGGTCTC TGACTTGGTT ATGTGATTTG AACCGGATTC 
    GTAAACCGGA GTGTCTGAAA TTTCTTTGAT AAAGATTAAT TAAAGGATTA 
    TTATCGGCAT GGGAGGTTTT TTAATGGATC TCTTCTTAGG AAAAGAGGAG 
    ATTTCTCTGC AAGTTTTTTT TTTGTATATT TATTATTTCC TAATTTCGTA 
    TAATCTCTGT TCCATAATCG ATGATTCGAG GGAGATTCCT CAGTGTATAG 
    GAGTTGCTTA GGATTTTTCA TTATGATGGA TTCACTAATA TTGATATTGT 
    TGGTTATTGT TTTTTTTATA TATTATGATG TAAGATGCAA GTCGCAATGT 
    AATTATTAAA TATCTTATGA ATGAAATGAG AATGTAAATT ATTTAT

    Gene models with high sequence identity

    1. AT2G19810.1 [+] show detail - CCCH-type zinc finger family protein
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, CCCH-type 6.484
    ProfileScan Zinc finger, CCCH-type 12.699
    ProfileScan Zinc finger, CCCH-type 6.568
    superfamily CCCH zinc finger 0.0031
    superfamily CCCH zinc finger 0.018
    HMMPanther UNCHARACTERIZED 3.5e-07
    HMMSmart Zinc finger, CCCH-type 0.00012
    HMMSmart Zinc finger, CCCH-type 0.53

    See the detailed result >

    AT2G19810.1

    Model type
    Protein coding
    Short Description
    CCCH-type zinc finger family protein
    Computational Description
    CCCH-type zinc finger family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT4G29190.1); Has 721 Blast hits to 690 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 6; Plants - 412; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR