F23520

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23520

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23520

Determination of introduced cDNA(s)

  • RAFL09-07-N23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-07-N23 - Resource: pda05214

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-07-N23 - full reading
    ACACAAAGTA ATTACAATGG AACACAGAAA GGTAAGAGGG AACGGCATAG 
    ACATTCACGT AGCAATCCAA GGTCCCTCCG ATGGTCCTAT AGTCCTCCTC
    CTCCATGGTT TCCCTGAGCT TTGGTACTCA TGGCGCCACC AGATCCCTGG
    ACTCGCCGCT CGTGGCTACC GTGCCGTCGC TCCTGACCTA CGTGGTTACG
    GTGACTCCGA TGCTCCCGCT GAGATCTCTT CCTACACATG CTTCAACATC
    GTTGGTGACT TAATCGCCGT CATATCCGCC TTAACCGCCT CAGAGGATGA
    GAAGGTCTTT GTGGTTGGAC ATGATTGGGG AGCTCTCATC GCTTGGTATT
    TATGTCTCTT CCGACCAGAT AGAGTCAAAG CTCTGGTCAA CCTCAGTGTT
    CCGTTCTCTT TCCGGCCAAC CGATCCATCG GTGAAGCCCG TTGATCGCAT
    GCGTGCTTTC TACGGCGATG ATTACTATAT CTGCAGGTTT CAGGAATTTG
    GAGATGTAGA AGCTGAGATT GCAGAGGTTG GAACAGAGAG AGTCATGAAG
    AGACTACTCA CTTATAGAAC TCCTGGACCG GTAATTATCC CGAAGGACAA
    AAGTTTTTGG GGATCCAAAG GCGAAACTAT ACCACTCCCG TCTTGGCTAA
    CGGAGGAAGA TGTTGCTTAC TTCGTCAGCA AGTTTGAAGA GAAAGGCTTC
    TCTGGTCCAG TCAATTACTA CCGTAACTTC AACAGGAACA ATGAGTTGTT
    GGGTCCATGG GTGGGAAGCA AAATCCAGGT TCCTACAAAG TTTGTGATAG
    GGGAGCTTGA TCTGGTCTAC TATATGCCTG GTGTGAAGGA ATATATACAT
    GGTCCCCAGT TTAAGGAAGA TGTGCCTTTG CTTGAAGAGC CTGTGGTCAT
    GGAAGGAGTG GCTCACTTCA TTAACCAAGA AAAGCCTCAG GAGATTCTCC
    AAATTATCCT TGATTTCATC TCCAAATTCT AATGTTGCTT TCCCTTAAAT
    TACTCTTTTA ATCAAGTTCC ATAATAAGTT GAATTATGAG GATATACATC
    CTCATGTATG GTTGTATCAT CCTATAACCT ATATAATCTA TGTATGGATG
    CGTGCATATT ATTTGAAAAA AAAAAAAAAA AT

    Gene models with high sequence identity

    1. AT2G26740.1 [+] show detail - soluble epoxide hydrolase
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily alpha/beta-Hydrolases 1.1e-62
    FPrintScan Epoxide hydrolase-like 2.8e-50
    FPrintScan Epoxide hydrolase-like 2.8e-50
    FPrintScan Epoxide hydrolase-like 2.8e-50
    FPrintScan Epoxide hydrolase-like 2.8e-50
    FPrintScan Epoxide hydrolase-like 2.8e-50
    FPrintScan Epoxide hydrolase-like 2.8e-50
    FPrintScan ABHYDROLASE 4.4e-06
    FPrintScan ABHYDROLASE 4.4e-06
    FPrintScan ABHYDROLASE 4.4e-06
    HMMPanther EPOXIDE HYDROLASE 7.9e-123
    HMMPanther ALPHA/BETA HYDROLASE RELATED 7.9e-123
    Gene3D no description 9.6e-61
    HMMPfam Alpha/beta hydrolase fold-1 5.7e-14

    See the detailed result >

    AT2G26740.1

    Model type
    Protein coding
    Short Description
    soluble epoxide hydrolase
    Curator Summary
    Encodes a soluble epoxide hydrolase whose expression is induced by auxin and water stress.
    Computational Description
    soluble epoxide hydrolase (SEH); CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G26750.1); Has 16813 Blast hits to 16796 proteins in 1664 species: Archae - 95; Bacteria - 12002; Metazoa - 658; Fungi - 513; Plants - 624; Viruses - 3; Other Eukaryotes - 2918 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR