F23601

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23601

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F23601

Determination of introduced cDNA(s)

  • RAFL05-16-B15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-16-B15 - Resource: pda07343

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-16-B15 - full reading
    ACTACACCCA AAAAAGCTTC TAACAAAGAG AAAGTGTCTG TATGTTGTGC 
    CCACTCTCTA CATTTATCAA TCACTTCATG TGTGTTACCT TGATTGCAAA
    AAAGTGAGAA TATATTCTCA CAACATTAAA TCCACCCCGA AATCGAAGTG
    AGTATATCAC GAGTGTAGTA ATATCTTAGA GATGGTTTTG GAGGATAGAA
    AGGACGGTTC TTCTTTGCCG GGACGATCCG GTAGTTTCTC TAAATCGTCA
    CCGTCGGAGT TGGATGTTGT TGATCCCTAC AAGCGGATAA GTTCGCCGGG
    ATCTATATTG GATGCTGAGA AGGTAGAGAA AAAGCCTGGA GGATGGAGAG
    CCGTCTCGTT CATTTTAGGA AATGAGACGC TGGAGAGACT GGGATCGATA
    GGATTGTTGG CAAACTTCAT GGTTTATCTA ACCAAAGTGT TTCACTTAGA
    ACAAGTCGAC GCTGCAAATG TCATCAACAT TTGGTCAGGT TTCACCAATC
    TCACTCCTCT CGTCGGAGCG TATATCTCAG ACACTTATGT TGGCCGCTTC
    AAGACCATCG CTTTCGCCTC ATTCGCCACT CTCCTCGGAC TAATAACAAT
    TACACTCACA GCATCGTTTC CTCAACTCCA CCCAGCATCA TGCAACAGCC
    AGGACCCACT CAGTTGCGGC GGTCCGAATA AGCTCCAGAT CGGAGTTTTG
    CTATTGGGAC TCTGTTTCCT CTCCGTAGGG AGTGGAGGAA TACGACCTTG
    TAGCATCCCT TTTGGGGTTG ATCAGTTTGA CCAACGAACT GAGGAAGGGG
    TTAAAGGAGT GGCCAGTTTC TTCAACTGGT ATTACATGAC TTTCACTGTG
    GTTCTGATCA TTACACAGAC CGTAGTTGTG TATATCCAGG ATCAAGTCAG
    TTGGATTATC GGTTTTAGTA TCCCTACCGG ACTCATGGCT CTTGCGGTTG
    TTATGTTTTT TGCCGGAATG AAGCGTTATG TCTACGTTAA ACCAGAAGGA
    AGTATATTCT CTGGGATCGC TCAAGTTATC GTGGCAGCTC GTAAGAAGCG
    AAAGCTGAAA CTTCCGGCGG AAGATGACGG CACTGTCACC TATTACGACC
    CAGCCATCAA GTCTAGCGTG TTATCCAAGT TACACCGCAG TAACCAATTC
    AGGTGTCTTG ACAAAGCCGC GGTGGTTATA GAAGGTGACC TAACACCCGA
    GGGACCTCCC GCAGACAAGT GGCGGTTATG CAGCGTCCAA GAAGTGGAAG
    AAGTGAAGTG TTTGATCCGA ATTGTTCCTA TCTGGTCGGC CGGAATAATC
    TCACTCGCGG CCATGACAAC ACAAGGCACT TTCACGGTCT CTCAAGCTTT
    GAAAATGGAT CGAAACTTAG GTCCTAAATT CGAGATTCCG GCTGGTTCAC
    TCTCCGTCAT CTCTCTCCTC ACAATCGGCA TCTTTCTTCC CTTCTACGAC
    CGCGTTTTTG TACCATTCAT GCGGCGAATC ACCGGCCATA AATCCGGAAT
    CACACTCCTC CAAAGGATAG GAACAGGGAT CGTTTTCGCG ATCTTTTCTA
    TGATCGTTGC GGGCATTGTG GAGCGTATGA GACGCATACG CTCCATCAAT
    GCCGGAGATC CAACGGGAAT GACTCCAATG TCGGTGTTTT GGCTTTCGCC
    GCAGCTAATT CTCATGGGAC TATGTGAAGC ATTCAATATC ATCGGACAAA
    TTGAGTTCTT CAACAGTCAG TTTCCAGAGC ACATGAGAAG TATCGCTAAC
    TCTCTCTTCT CTTTATCGTT CGCCGGTTCG AGCTACCTTA GTAGTTTCCT
    TGTGACTGTC GTTCATAAAT TCTCCGGTGG GCATGATCGT CCGGATTGGC
    TAAACAAGAA TCTCAACGCG GGAAAATTGG ATTACTTCTA TTATCTGATT
    GCGGTTTTGG GTGTGGTTAA TCTGGTTTAC TTTTGGTATT GTGCTCGGGG
    ATACCGGTAC AAGGTCGGTT TACCGATTGA AGACTTTGAG GAGGACAAGT
    CCTCCGATGA TGTTGAGATG ACTTCGAAGA AATCGATGAA ATGATTTAAT
    AGACTATCCT TAGGGACAAC AAGAAGATTG TCGATGTTGT TTGAATAATT
    ACTATGACAA TGTATGTATC ATAATATGTA AGAACTAGAA TATTTAATAA
    AATTTTACCT TTCATTAG

    Gene models with high sequence identity

    1. AT1G69870.1 [+] show detail - nitrate transporter 1.7
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Major facilitator superfamily, general substrate transporter 1e-23
    HMMPanther NITRATE TRANSPORTER (NRT1) 0
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 0
    HMMPfam Oligopeptide transporter 1.5e-70

    See the detailed result >

    AT1G69870.1

    Model type
    Protein coding
    Short Description
    nitrate transporter 1.7
    Curator Summary
    Encodes a low affinity nitrate transporter NRT1.7. Expressed in phloem. Responsible for source-to-sink remobilization of nitrate.
    Computational Description
    nitrate transporter 1.7 (NRT1.7); FUNCTIONS IN: low affinity nitrate transmembrane transporter activity, transporter activity; INVOLVED IN: oligopeptide transport, response to salt stress, nitrate transport, low affinity nitrate transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 1.6 (TAIR:AT1G27080.1); Has 4600 Blast hits to 4423 proteins in 820 species: Archae - 0; Bacteria - 1236; Metazoa - 519; Fungi - 428; Plants - 2212; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR