F23602

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23602

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Seed::light blue

Original: F23602

Determination of introduced cDNA(s)

RAFL04-15-D01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-15-D01 - Resource: pda00502

full reading [+] show sequence

TGACGTCAAA CTCTCTCTAT ACACAGAGTT AAATTGAGTT TGTGTCTCGT 
AACTTATCCT GTGAGCGAAA ATGGTGAAAG CAACTAAGGC AGAGAAGAAG 
ATCGCCTACG ATACCAAGCT ATGTCAGCTT ATCGATGAGT ACACCCAGAT 
CTTGGTCGTT GCGGCCGATA ACGTCGGATC AACTCAGCTT CAGAACATCA 
GAAAGGGTCT TCGTGGAGAC TCCGTCGTGC TTATGGGGAA GAACACTATG 
ATGAAGCGTT CCGTTAGGAT TCACTCTGAG AACACCGGAA ACACTGCAAT 
CCTGAATCTG CTTCCTCTCC TTCAGGGAAA CGTTGGTTTG ATCTTTACCA 
AAGGTGACCT CAAGGAAGTG AGCGAGGAGG TTGCTAAGTA CAAGGTTGGT 
GCCCCTGCTC GTGTGGGTTT GGTGGCTCCA ATTGATGTGG TTGTCCAACC 
TGGCAACACT GGTCTCGACC CATCCCAAAC ATCTTTCTTC CAGGTGCTTA 
ACATCCCAAC CAAGATTAAC AAGGGTACCG TCGAAATCAT CACCCCAGTT 
GAGCTTATCA AGCAAGGTGA CAAGGTCGGG TCTTCTGAGG CTGCGCTTCT 
AGCCAAGCTT GGCATCAGGC CGTTCTCATA TGGTCTTGTT GTCCAGTCTG 
TCTATGACAA TGGCTCAGTC TTCAGCCCAG AGGTTCTTGA TCTTACTGAA 
GACCAACTTG TGGAGAAGTT TGCTTCTGGT ATCTCCATGG TCACTTCCTT 
GGCTCTTGCT GTGTCGTACC CTACCCTTGC TGCTGCACCG CATATGTTCA 
TCAATGCGTA CAAGAATGCC TTGGCTATTG CTGTTGCCAC TGAGTACACC 
TTCCCTCAAG CAGAGAAGGT CAAGGAATAC TTGAAGGATC CAAGCAAGTT 
TGCTGTTGCT TCAGTAGCTG CGGTGTCTGC TGATGCAGGT GGTGGTGCCC 
CAGCTGCTGC TAAGGTAGAG GAGAAGGAAG AGTCCGACGA AGAAGACTAT 
GGAGGTGATT TCGGTTTGTT CGATGAAGAG TAGATTTTGT CGGTTAAGAT 
CTTACCTTTT TGTCGTGGAT TATAAGTGTT GCTTTGTTTT TAGTATGTTG 
GACCTCAATT TTCTTGGTTT TAGCCAATCC AGTTTTATGT TACCAAAAAA 
AAAAAAAAAA

Gene models with high sequence identity

AT3G09200.1 [+] show detail - Ribosomal protein L10 family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	60S ACIDIC RIBOSOMAL PROTEIN P0	3.5e-178
HMMPanther	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	3.5e-178
HMMPfam	Ribosomal protein L10	1.1e-21
HMMPfam	Ribosomal protein 60S	1.5e-16

See the detailed result >

AT3G09200.1

Model type: Protein coding
Short Description: Ribosomal protein L10 family protein
Computational Description: Ribosomal protein L10 family protein; FUNCTIONS IN: structural constituent of ribosome, copper ion binding; INVOLVED IN: in 6 processes; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813), Ribosomal protein L10 (InterPro:IPR001790); BEST Arabidopsis thaliana protein match is: Ribosomal protein L10 family protein (TAIR:AT3G11250.1); Has 1610 Blast hits to 1607 proteins in 477 species: Archae - 322; Bacteria - 1; Metazoa - 504; Fungi - 287; Plants - 176; Viruses - 0; Other Eukaryotes - 320 (source: NCBI BLink).
Link: InterPro Scan - TAIR