F23604

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23604

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F23604

Determination of introduced cDNA(s)

  • RAFL07-13-D23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-13-D23 - Resource: pda04206

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-13-D23 - full reading 
    ATCCAATCGT CTGATTCTCA TCTTTCTCCG TTACTTGTGG ATCTTACGCA 
    ATGTATAGAG TTTTTGCGAG CCGAGCACTG AGAGCTAAGT CTCTCTGTGA 
    CAAATCATCC ACCTCGCTTG CTTCTTTGAC TCTCTCCAGA TTGAATCATT 
    CCATACCTTT TGCTACCGTA GATGCCGAGG AGCTCTCTGG TGCTCATCCT 
    GCTGAAGTAC AGAGCTTTGT GCAGGGAAAG TGGATAGGAT CGTCAAATCA 
    TAACACGCTT CTAGATCCTC TAAATGGAGA ACCGTTTATC AAAGTTGCGG 
    AAGTGGATGA ATCAGGAACT CAGCCATTTG TGGACAGCTT ATCCCAGTGC 
    CCGAAACATG GTCTCCATAA CCCTTTCAAA TCTCCAGAGA GATACCTTTT 
    ATATGGAGAT ATCTCGACAA AGGCAGCTCA TATGCTCGCC TTACCTAAGG 
    TTGCTGATTT CTTCGCGAGG TTAATTCAAA GGGTTGCTCC AAAGAGTTAC 
    CAGCAAGCTG CTGGAGAAGT CTTTGTCACA CGGAAGTTTT TAGAAAACTT 
    TTGTGGTGAT CAGGTGCGGT TCCTGGCACG GTCTTTTGCA ATCCCTGGGA 
    ATCATCTTGG GCAGCAAAGT CATGGTTACC GTTGGCCTTA TGGTCCTGTA 
    ACGATTGTTA CACCATTTAA TTTTCCACTT GAGATTCCAC TACTTCAGTT 
    GATGGGGGCA TTATACATGG GTAACAAACC TCTTCTTAAA GTGGACAGCA 
    AGGTAAGCAT TGTTATGGAG CAAATGATGC GATTGCTCCA CTATTGTGGT 
    TTACCCGCTG AAGATGTGGA CTTTATAAAT TCTGATGGGA AGACAATGAA 
    CAAGATATTG TTAGAGGCGA ACCCACGGAT GACCCTCTTC ACGGGTAGTT 
    CTAGAGTAGC TGAAAAGTTG GCACTTGACC TTAAGGGTCG AATCAGATTG 
    GAAGATGCTG GATTTGATTG GAAAGTCTTA GGACCAGATG TTCAGGAGGT 
    TGATTATGTT GCATGGCAAT GTGATCAAGA TGCATACGCG TGCAGTGGAC 
    AGAAGTGTTC TGCACAGTCT ATGCTTTTTG TTCATGAGAA CTGGTCAAAA 
    ACCCCTCTTG TTTCCAAATT AAAAGAACTA GCGGAAAGAC GCAAACTGGA 
    AGACTTAACC ATTGGTCCTG TCCTTACATT TACAACTGAG GCAATGTTGG 
    AGCACATGGA GAATCTGCTT CAGATTCCTG GCTCAAAGCT ACTCTTTGGT 
    GGCAAGGAAT TGAAGAATCA TTCGATTCCT TCAATCTACG GAGCTTTGGA 
    GCCAACTGCA GTTTATGTTC CCATTGAAGA AATCTTGAAG GATAATAAAA 
    CCTACGAACT CGTCACCAAA GAAATCTTTG GACCATTTCA GATTGTAACG 
    GAATACAAAA AGGATCAACT TCCTCTAGTG TTGGAAGCAT TGGAGAGGAT 
    GCACGCTCAT CTAACTGCAG CTGTTGTTTC AAACGATCCC ATCTTTCTTC 
    AGGAAGTAAT AGGGAACTCA GTGAATGGGA CTACATATGC TGGACTAAGA 
    GGAAGAACAA CTGGAGCTCC TCAGAATCAC TGGTTTGGAC CTGCGGGGGA 
    CCCGAGAGGG GCCGGGATAG GGACACCAGA GGCTATAAAG CTGGTTTGGT 
    CATGCCACAG AGAAGTCATC TACGATTATG GTCCGGTTCC ACAAGGTTGG 
    GAACTTCCTC CATCTACTTA GAAGTGGTGT GTCCACTAAT AATTAATAAA 
    CTAAGATCTT AGTGTGCTGT TGCATCAAAT AAATATGAGT TTTGTAGTTT 
    TATCTCTACG AGTAGTTTCC GTGTGAGGGA ATAAGAGCTT GAAACATGAA 
    GTTTTCAACG ACGTTGACTT AGTCAAGGGG TAGAGGGATT AAGACAGAGA 
    GAGAACTATT GTAAAACTCA GTCCACCAGA AATTTTCTTC AGCTCAAAGC 
    CAGACAATAA TACAAATGTT TTTGA

    Gene models with high sequence identity

    1. AT5G62530.1 [+] show detail - aldehyde dehydrogenase 12A1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ALDEHYDE DEHYDROGENASE-RELATED 0
    HMMPanther Aldehyde dehydrogenase 0
    superfamily Aldehyde/histidinol dehydrogenase 1.1e-51
    Gene3D Aldehyde dehydrogenase, N-terminal 2.5e-32
    HMMPfam Aldehyde dehydrogenase 2.4e-37
    PatternScan Aldehyde dehydrogenase, conserved site 0

    See the detailed result >

    AT5G62530.1

    Model type
    Protein coding
    Short Description
    aldehyde dehydrogenase 12A1
    Curator Summary
    Encodes mitochondrial Delta-pyrroline-5- carboxylate dehydrogenase. Involved in the catabolism of proline to glutamate. Involved in protection from proline toxicity. Induced at pathogen infection sites. P5CDH and SRO5 (an overlapping gene in the sense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.
    Computational Description
    aldehyde dehydrogenase 12A1 (ALDH12A1); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, cobalt ion binding, zinc ion binding, 1-pyrroline-5-carboxylate dehydrogenase activity; INVOLVED IN: oxygen and reactive oxygen species metabolic process, response to salt stress, proline catabolic process to glutamate, proline metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: aldehyde dehydrogenase 7B4 (TAIR:AT1G54100.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR