F23607

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23607

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23607

Determination of introduced cDNA(s)

  • RAFL09-07-I16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-07-I16 - Resource: pda05183

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-07-I16 - full reading 
    TTTCTTCTCT CTCGCTTTGC TCTCTCGGAA TTGTTTTTGC AGAAAGTCTC 
    TCATCTGAAC TCAGAAAATC TCCGAGTTCG TATATCTTCT CCGTTTGAGC 
    AATGGCGTTG GTCATGCACA CATACAAGGG AAACAAAGGT GCCAATAAGG 
    CACTTATTGC TGCAGAGTAT GCGGGTGTGA AGATCGAGGA GTCCGCAGAC 
    TTTCAGATGG GCGTCACTAA CAAGTCACCT GAGTTCCTTA AGATGAACCC 
    TATTGGAAAG GTTCCTGTGC TTGAGACTCC TGAAGGTCCC ATATTTGAGA 
    GCAATGCCAT TGCCCGATAT GTGAGCCGTA AGAATGGTGA CAACTCTTTG 
    AATGGATCCT CCCTTATTGA ATACGCTCAC ATTGAGCAAT GGATCGATTT 
    CTCCTCATTG GAGATTGATG CTAACATGTT GAAGTGGTTT GCTCCAAGAA 
    TGGGCTATGC TCCCTTCTCT GCCCCAGCTG AGGAAGCGGC AATTTCTGCA 
    TTGAAGAGAG GACTTGAGGC TCTGAACACA CATCTCGCCT CCAACACTTT 
    CCTTGTTGGA CACTCTGTCA CCCTTGCTGA TATTGTCACA ATCTGCAACT 
    TGAACTTGGG ATTTGCCACC GTGATGACCA AGAAATTTAC CTCTGCATTC 
    CCTCATGTTG AGAGATACTT CTGGACAATG GTTAACCAGC CAGAATTCAA 
    GAAGGTGTTG GGTGATGCCA AACAAACCGA AGCTGTCCCT CCAGTTCCTA 
    CTAAGAAAGC TCCACAGCCT GCTAAGCCCA AGGAGGAGCC CAAGAAGGCA 
    GCCCCTGTAG CAGAGGCACC AAAGCCTGCT GAGGAGGAGG AAGCACCAAA 
    GCCTAAAGCC AAGAATCCTC TTGACTTGCT ACCACCAAGC CCAATGGTTC 
    TCGATGACTG GAAGAGGCTT TACTCGAACA CCAAATCCAA CTTCCGTGAG 
    GTTGCTATCA AAGGATTCTG GGACATGTAT GACCCGGAGG GGTACTCACT 
    ATGGTTCTGT GACTATAAGT ACAACGATGA GAACATGGTC TCCTTTGTTA 
    CACTCAACAA GGTAGGAGGG TTCCTTCAGC GTATGGACTT GGCACGTAAA 
    TACTCCTTTG GAAAGATGCT TATTTGCGGG TCAGAGGGTC CTTTCAAGGT 
    GAAGGGTTTA TGGCTTTTCC GTGGACCAGA GATCCCCAAG TTCATAATGG 
    ATGAGGTGTA CGACATGGAG CTGTACGAGT GGACTAAGGT TGATATCTCC 
    GATGAAGCAC AGAAGGAGCG TGTTAGCCAG ATGATTGAAG ACGCTGAGCC 
    ATTTGAAGGC GAGGCTCTTT TGGACGCCAA ATGCTTTAAG TGAAAAGGCT 
    CTTTGTATCT CCGTAGAGGT TTACTCTGTT ACTCGTGTTT TGATACCTTC 
    TAGAGAGTCC TTACCACCTT TTGAATCGTA CTCGGGTTTA AGAACTAGTT 
    GCTTCTCAAT GTTATTTTGA CAGAATATTG TTCTTAAATA CATTACAACT 
    TCTAGTTATT GTTTTTATTT TGTTTTTTAT TATCCAAACT CGTGTGTGTG 
    ACATTCTCTC TTTAAATTAG TTGCTTGGAA GATGCAAAGA ATCTCGTTTA 
    ATGGGG

    Gene models with high sequence identity

    1. AT1G57720.1 [+] show detail - Translation elongation factor EF1B, gamma chain
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ELONGATION FACTOR 1 GAMMA 5.4e-107
    HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 5.4e-107
    superfamily Translation elongation factor EF1B, gamma chain, conserved 2.5e-59
    superfamily Glutathione S-transferase, C-terminal-like 2.2e-36
    superfamily Thioredoxin-like fold 4e-18
    Gene3D Thioredoxin fold 7.6e-13
    Gene3D Glutathione S-transferase, C-terminal-like 4e-38
    HMMPfam Translation elongation factor EF1B, gamma chain, conserved 1e-39
    HMMPfam Glutathione S-transferase, N-terminal 1.6e-13
    HMMPfam Glutathione S-transferase, C-terminal 9.7e-11
    ProfileScan Translation elongation factor EF1B, gamma chain, conserved 83.106
    ProfileScan Glutathione S-transferase, N-terminal 22.469
    ProfileScan Glutathione S-transferase/chloride channel, C-terminal 24.707

    See the detailed result >

    AT1G57720.1

    Model type
    Protein coding
    Short Description
    Translation elongation factor EF1B, gamma chain
    Computational Description
    Translation elongation factor EF1B, gamma chain; FUNCTIONS IN: copper ion binding, translation elongation factor activity; INVOLVED IN: response to cadmium ion, response to zinc ion; LOCATED IN: cell wall, plasma membrane, vacuole, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Translation elongation factor EF1B, gamma chain, conserved (InterPro:IPR001662), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1B, gamma chain (TAIR:AT1G09640.1); Has 10185 Blast hits to 9750 proteins in 1401 species: Archae - 0; Bacteria - 5136; Metazoa - 1722; Fungi - 558; Plants - 845; Viruses - 5; Other Eukaryotes - 1919 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR