F23615

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23615

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Original: F23615

Determination of introduced cDNA(s)

  • RAFL09-19-G15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-19-G15 - Resource: pda05509

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-19-G15 - full reading
    GAACTTGTCT GAGTTCCAAT GCGGCTGCTG CTATCATCTG ATCCCCAACC 
    CGAACTTACG TCTACATGTA CCTCTCATAG TTGCGGCTGG AAGCCTTACT
    CTCATTCCAA TGACTTTGCT GCCAACGCGT TCCTCCTTCT CATCATCCTC
    TTCTGTTCTT TCATATGCGT CCTCTCTCTC CACGCTGCTA TCCGTTGTTG
    CCTCCGTCCA GTCCTCCAAC ATGTCCCTAA GCCCGACCCG GACCTTGAGG
    CCACCCATCC AGACGCTCCC CCGACACTTG TCTACTCCCC GGGCCTAAAC
    CTAGCAGGCA ATGAAGCAGA GTGCATCATT TGTTTGTCTG AATTCCAAGA
    CGGTGACACC TTACGCGTGT TGGAGAGATG CAAACATGGA TTCCACGTTT
    ATTGCATCCA GAAGTGGCTC TCCTCATCCC ATTCTTCTTG TCCCACTTGC
    CGGACAAACA TCTTCTCCTC CCCACCTCAA CTTCACTCAC AAAGCTTACC
    ACTAACGAGT ACACCTTAGT CAGATGGTAG CTAGTTCCTG GTCTTGCCCA
    CTTTTTTTTT ATCTTTATTT TCTTTACAAC TTCACACCAC TATCATGTTT
    TACAAGTTAG TTTATTTTTT ACCTTTCTCC TTTTATATTC CT

    Gene models with high sequence identity

    1. AT4G17245.1 [+] show detail - RING/U-box superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RING/U-box 3.2e-16
    HMMPfam Zinc finger, C3HC4 RING-type 1.1e-08
    HMMSmart Zinc finger, RING-type 2.9e-07
    Gene3D no description 1.1e-13
    ProfileScan Zinc finger, RING-type 12.711
    HMMPanther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D 1.3e-14

    See the detailed result >

    AT4G17245.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G47610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR