F23615

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23615

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Original: F23615

Determination of introduced cDNA(s)

  • RAFL09-19-G15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-19-G15 - Resource: pda05509

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-19-G15 - full reading 
    GAACTTGTCT GAGTTCCAAT GCGGCTGCTG CTATCATCTG ATCCCCAACC 
    CGAACTTACG TCTACATGTA CCTCTCATAG TTGCGGCTGG AAGCCTTACT 
    CTCATTCCAA TGACTTTGCT GCCAACGCGT TCCTCCTTCT CATCATCCTC 
    TTCTGTTCTT TCATATGCGT CCTCTCTCTC CACGCTGCTA TCCGTTGTTG 
    CCTCCGTCCA GTCCTCCAAC ATGTCCCTAA GCCCGACCCG GACCTTGAGG 
    CCACCCATCC AGACGCTCCC CCGACACTTG TCTACTCCCC GGGCCTAAAC 
    CTAGCAGGCA ATGAAGCAGA GTGCATCATT TGTTTGTCTG AATTCCAAGA 
    CGGTGACACC TTACGCGTGT TGGAGAGATG CAAACATGGA TTCCACGTTT 
    ATTGCATCCA GAAGTGGCTC TCCTCATCCC ATTCTTCTTG TCCCACTTGC 
    CGGACAAACA TCTTCTCCTC CCCACCTCAA CTTCACTCAC AAAGCTTACC 
    ACTAACGAGT ACACCTTAGT CAGATGGTAG CTAGTTCCTG GTCTTGCCCA 
    CTTTTTTTTT ATCTTTATTT TCTTTACAAC TTCACACCAC TATCATGTTT 
    TACAAGTTAG TTTATTTTTT ACCTTTCTCC TTTTATATTC CT

    Gene models with high sequence identity

    1. AT4G17245.1 [+] show detail - RING/U-box superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RING/U-box 3.2e-16
    HMMPfam Zinc finger, C3HC4 RING-type 1.1e-08
    HMMSmart Zinc finger, RING-type 2.9e-07
    Gene3D no description 1.1e-13
    ProfileScan Zinc finger, RING-type 12.711
    HMMPanther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D 1.3e-14

    See the detailed result >

    AT4G17245.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G47610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR