F23625

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23625

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23625

Determination of introduced cDNA(s)

  • RAFL14-30-F18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL14-30-F18 - Resource: pda18425

    full reading [+] show sequence

    Nucleotide sequence: RAFL14-30-F18 - full reading 
    ACAAGTAACC GAGTTATATA CAACGAGTCA TCAAGAGAAA GAATCCCCCC 
    AAAAAATGGC CAAGTCATTG AACATCCTTA TTGCAGCTCT CTCGCTCATT 
    GCATTTTCTC CTTTTTGTTT GTGTTCCAAA GCCTATGGAA GTGGCGGCTA 
    TCTCTTTCCT CAGTTTTATG ACCAATCGTG TCCTAAAGCT CAAGAGATTG 
    TTCAGTCCAT TGTCGCTAAA GCATTCGAAC ATGATCCTCG CATGCCTGCC 
    TCCTTGCTCA GACTCCATTT CCACGACTGT TTCGTCAAGG GATGTGATGC 
    TTCCATACTA TTGGACAGCA GTGGAACCAT AATCAGCGAG AAACGATCAA 
    ACCCTAACAG AAACTCAGCC CGTGGTTTCG AACTCATCGA GGAAATCAAA 
    CATGCCTTAG AACAAGAGTG TCCTGAAACA GTTTCTTGCG CTGATATCTT 
    GGCTCTAGCC GCTAGAGACT CAACTGTTAT TACGGGTGGA CCGAGCTGGG 
    AAGTACCTCT AGGAAGAAGA GACGCGAGAG GAGCAAGCTT GAGTGGTTCC 
    AACAACGACA TTCCTGCTCC AAACAACACT TTCCAAACCA TCCTCACTAA 
    GTTCAAGCGT CAAGGCCTTG ATCTCGTCGA TCTTGTCTCC CTCTCAGGAA 
    GTCACACCAT TGGAAACTCG AGGTGCACAA GTTTCCGACA GAGGTTATAC 
    AATCAATCCG GCAACGGAAA GCCTGATATG ACTCTTAGCC AATACTATGC 
    AACACTATTG CGTCAACGAT GTCCGAGATC CGGAGGTGAC CAGACCCTAT 
    TCTTCCTCGA CTTCGCGACA CCGTTCAAGT TTGACAACCA CTACTTCAAG 
    AACCTGATAA TGTACAAAGG TCTATTGAGC TCTGATGAGA TTCTGTTCAC 
    GAAGAACAAA CAGTCCAAGG AGCTGGTGGA GCTATACGCT GAGAATCAAG 
    AGGCCTTCTT TGAGCAGTTT GCTAAATCGA TGGTGAAGAT GGGAAATATC 
    TCTCCGTTGA CAGGCGCCAA GGGAGAGATC AGGCGTATCT GTCGGAGGGT 
    TAACCATGCT TATTAATACA AATCCATCTT TATAATTTAT GTACAATATA 
    ATGCTTTCGT TTCTCATTGA GTTTTCAATT TCTTTTGGCT TTGTTTGCAT 
    GAGTGTGTAT CATATGTTTA TTACTCAAAT CTGATTTTGT TTCGGAAAAA 
    AAAAA

    Gene models with high sequence identity

    1. AT5G66390.1 [+] show detail - Peroxidase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Haem peroxidase, plant/fungal/bacterial 81.006
    HMMPfam Haem peroxidase, plant/fungal/bacterial 1.3e-72
    superfamily Haem peroxidase 2.4e-113
    PatternScan Peroxidases heam-ligand binding site 0
    FPrintScan Plant peroxidase 8.3e-65
    FPrintScan Plant peroxidase 8.3e-65
    FPrintScan Plant peroxidase 8.3e-65
    FPrintScan Plant peroxidase 8.3e-65
    FPrintScan Plant peroxidase 8.3e-65
    FPrintScan Plant peroxidase 8.3e-65
    FPrintScan Plant peroxidase 8.3e-65
    FPrintScan Plant peroxidase 8.3e-65
    FPrintScan Plant peroxidase 8.3e-65
    FPrintScan Haem peroxidase, plant/fungal/bacterial 3.1e-33
    FPrintScan Haem peroxidase, plant/fungal/bacterial 3.1e-33
    FPrintScan Haem peroxidase, plant/fungal/bacterial 3.1e-33
    FPrintScan Haem peroxidase, plant/fungal/bacterial 3.1e-33
    FPrintScan Haem peroxidase, plant/fungal/bacterial 3.1e-33
    Gene3D no description 1.9e-61

    See the detailed result >

    AT5G66390.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, hypocotyl, root, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT3G50990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR