F23627

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23627

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23627

Determination of introduced cDNA(s)

  • RAFL17-11-E08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL17-11-E08 - Resource: pda10516

    full reading [+] show sequence

    Nucleotide sequence: RAFL17-11-E08 - full reading 
    ACATAAGAGG GAAAAGGAAA ATGACTTATG GGGAGGAGGA GCCGGTTAGC 
    CCGATGGCGC GTGTATTCCA ATCGCCGGGC ATAGACTTAT GTGCCGTGAC 
    CATCATGGGT TTCAAAACAA AGATTAATCC CGACGTTGTT CTTGATGCCT 
    TGAAGCAAAA TGTCTCCAAG CATCCTCGTT TCTCCAGCAT ACTGTCTGAT 
    AATGGTGCAA AATGGATCGA GACCGAAGTT AATGTAGAAG ATCATGTAAT 
    TGTACCATAC ATAGACGCGG AAGAGATAGG TGAAGGTGGA CAAAGCTTCA 
    TCGATGATTA TATGTCACGT CTCACGATGA TTCCTCTTGA TAGATCAAGA 
    CCCTTGTGGG ACATTCACAT CCTTAACGTC AAAACCTCAG AGGCTGAAGC 
    AGTCGGTTTT ATAAGATCTC ACCATTCGTT GGGAGATGGA ATGTCTTTGA 
    TTTCCCTCAT GCTCGCATGT ACCCATAAAA CATCAGACCC AGACATGTTT 
    TCAAATGCTA TTCCATCCAT GAAACGGAGA GCCACAATGT CGCACAGCCT 
    TAAAACCAAA GGCTGGTTCT TGAGGTCGAT ATTCACCATT GGTTCTACAA 
    TGAGACTGCT TTGGAATACA ACTATAGATA TGTTGTTGCT TTTGGCGACG 
    GTGTTGTTTT TGAAAGATAC AAAAACGCCA CTAAAAGCTG GGGCAGATGT 
    CAGGAGCAAT CCAAAGAGAT TTTATCATCG AATTATCTCT TTAGATGACA 
    TTAAACTTAT CAAGAACGCT ATGAACATGA CTATCAACGA TGTTCTGTTC 
    GGAATTACAC AAGCATCTCT TTCTCACTAT TTGAACCGAC AGTATGGCAC 
    GAAGAAGGAG GAGGATGGAG CGTTGACATC GTATCGAAAC AATCTTCCTG 
    ATGGAATACG ATTTCGTGTA GCTTGTACAG TAAATCTTAG GTCAGACATT 
    GGCTTCAAGC CTTTGGCAGA TATGATGGTC AAGGATTCAA AATGCAGATG 
    GGGAAACTAC TTCAGCTTTA TTTTCTTGCC GTTCACCATC GGTTTACAAA 
    CCGATCCATT GGTTTATTTA AAAATGTCAA AATCCATGAT GGCTCGAAAG 
    AAGCACTCTT ATCACGCGGC TCTAGTGTAT TTTATCATCA AAATCGTCCT 
    AAAAGTGTTT GGCGCCAAGG CGGCAGCAGA ATTATTTGAT CGACCGGTGA 
    GGAACACAAC GACATGTGTT TCAAACGTCA TTGGCCCCAT GGAAGAAATC 
    AGTTTCCGTG GCCATCCTGT CTCTTACATC GCTCCAAGTT CTTACGGACA 
    CTCACATGCA TTGTTGATAC ATTTAATGAG TTACGCGGAT AAAATGATAA 
    TTTCGTTGGC GTATGATCCT ACCGTCATAT CAGACCCTCA CAAGATTTGT 
    GATGATATGG AAGAATCACT GAAAGCAATG AAAGCTTCTC TCTGTGAAAG 
    AGGTTTACTC TAAGACGCAT GAGCCATATT AACTGTAATC CTTAAGACTG 
    TGTATATGTT TTTGTTTGGT AAAAAATGTT GTGTTTTAGC

    Gene models with high sequence identity

    1. AT5G12420.1 [+] show detail - O-acyltransferase (WSD1-like) family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam O-acyltransferase, WSD1, C-terminal 2.2e-74
    HMMPfam O-acyltransferase, WSD1, N-terminal 5.7e-14
    superfamily CoA-dependent acyltransferases 7.1e-09

    See the detailed result >

    AT5G12420.1

    Model type
    Protein coding
    Short Description
    O-acyltransferase (WSD1-like) family protein
    Computational Description
    O-acyltransferase (WSD1-like) family protein; CONTAINS InterPro DOMAIN/s: O-acyltransferase, WSD1, C-terminal (InterPro:IPR009721), O-acyltransferase, WSD1, N-terminal (InterPro:IPR004255); BEST Arabidopsis thaliana protein match is: O-acyltransferase (WSD1-like) family protein (TAIR:AT5G16350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR