F23646

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23646

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
stem (PO:0009047)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23646

Determination of introduced cDNA(s)

  • RAFL05-08-J06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-08-J06 - Resource: pda00917

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-08-J06 - full reading 
    ACGACGCGTT TCCGCTCACT AATTTTTTTT AACCTTTTTG TGTCTCCGTC 
    GTCTTTTGAT CTTCAATCTC AGTTTTGAGC TGAAGATTAT CGTATCGACC 
    TGCGATTCTC TTCAGATCGA TAATCCATGG CTGCAGCTGG AAACAAGAGC 
    ATTAACGCCA AATTGGTGTT GCTTGGAGAT GTTGGTGCTG GAAAATCAAG 
    TCTTGTGTTA CGGTTTGTCA AAGATCAGTT TGTTGAATTC CAGGAATCAA 
    CCATTGGTGC TGCTTTTTTC TCACAAACGT TAGCTGTGAA CGATGCCACT 
    GTGAAGTTTG AGATTTGGGA TACAGCGGGT CAGGAACGGT ACCATAGTTT 
    GGCTCCAATG TACTACAGAG GTGCTGCTGC TGCAATCATT GTTTTTGATG 
    TTACGAATCA GGCTTCGTTT GAGAGGGCAA AGAAATGGGT TCAGGAACTG 
    CAGGCACAAG GTAACCCTAA TATGGTCATG GCCCTTGCTG GAAACAAATC 
    TGATTTATTA GATGCAAGGA AGGTGACAGC AGAGGATGCA CAAACATATG 
    CTCAGGAAAA CGGTCTTTTC TTCATGGAAA CTTCAGCAAA AACCGCTACT 
    AATGTCAAAG AGATATTCTA TGAAATCGCA AGAAGGCTAC CGCGAGTACA 
    GCCAACAGAA AACCCAACAG GAATGGTTCT GCCAGACAGG GCCATGGATA 
    GGGCAGTGAG CTCATCTTGT TGTGCTTAGT TATATTGTGT AATGGCACAC 
    ACTTCTCTTA AAAAGAGATC TTTTGGTCAC TTTAAAGTTA TGGACTTCTG 
    TGTTTGCGTC TCTTTGCTTT GTTTTACGTA TTTGAGATTT GATCTCCACT 
    ATTTTGTAAA TAAATCTAAT ACTCAACTAA GTAACTAAGT GCGTGAGGGG 
    GCAAAAAAAA AAAAAAAA

    Gene models with high sequence identity

    1. AT4G19640.1 [+] show detail - Ras-related small GTP-binding family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Ras GTPase 2.4e-37
    FPrintScan Ras GTPase 2.4e-37
    FPrintScan Ras GTPase 2.4e-37
    FPrintScan Ras GTPase 2.4e-37
    FPrintScan Ras GTPase 2.4e-37
    HMMTigr Small GTP-binding protein 1e-25
    ProfileScan Small GTPase 33.382
    Gene3D no description 7.2e-59
    superfamily P-loop containing nucleoside triphosphate hyd 2.2e-58
    HMMPanther Rab5-related 4.3e-78
    HMMPanther RAS-RELATED GTPASE 4.3e-78
    HMMSmart Ras small GTPase, Ras type 1.8e-29
    HMMSmart Ras small GTPase, Rab type 9.9e-80
    HMMSmart Small GTPase, Rho type 1.2e-11
    HMMSmart Ran GTPase 1.9e-07
    HMMPfam Ras 1.9e-60

    See the detailed result >

    AT4G19640.1

    Model type
    Protein coding
    Short Description
    Ras-related small GTP-binding family protein
    Curator Summary
    Encodes Ara7.
    Computational Description
    ARA7; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: endosome, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab5-related (InterPro:IPR015599); BEST Arabidopsis thaliana protein match is: RAB homolog 1 (TAIR:AT5G45130.1); Has 26416 Blast hits to 26384 proteins in 719 species: Archae - 27; Bacteria - 133; Metazoa - 13862; Fungi - 3690; Plants - 2969; Viruses - 20; Other Eukaryotes - 5715 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR