F23702

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23702

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F23702

Determination of introduced cDNA(s)

  • RAFL05-07-L13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-07-L13 - Resource: pda01173

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-07-L13 - full reading 
    AAAGAGTTCT CCTACAATTT TCCTAAATTC TTGGATTTGA GATTTCACTT 
    TTTCCGATTT GAAACAATGA TGATAACTCG CGGTGGAGCC AAGGCGGCGA 
    AATCGCTGTT AGTGGCGGCT GGACCACGTT TGTTCTCGAC GGTCCGTACG 
    GTTTCGTCTC ACGAGGCTTT ATCAGCAAGC CATATTTTGA AGCCTGGTGT 
    TACATCTGCT TGGATATGGA CTAGAGCTCC GACGATTGGA GGTATGAGAT 
    TCGCTAGCAC GATCACTCTG GGAGAGAAAA CTCCGATGAA GGAGGAGGAC 
    GCGAATCAGA AGAAAACAGA GAACGAATCC ACCGGTGGAG ACGCCGCCGG 
    AGGTAATAAC AAGGGAGATA AAGGAATCGC GAGCTATTGG GGTGTTGAAC 
    CTAATAAGAT TACTAAAGAA GATGGTTCTG AATGGAAGTG GAACTGTTTC 
    AGGCCATGGG AAACGTATAA AGCTGATATA ACGATAGATC TGAAGAAGCA 
    TCATGTTCCA ACGACGTTTC TTGATAGAAT AGCTTATTGG ACTGTTAAAT 
    CTCTTCGTTG GCCTACCGAT TTGTTCTTCC AGAGGAGATA TGGATGTCGA 
    GCTATGATGC TTGAAACTGT AGCAGCAGTA CCTGGAATGG TTGGAGGAAT 
    GTTACTACAC TGCAAATCGC TTCGACGTTT TGAGCAAAGT GGAGGATGGA 
    TTAAGGCTCT TCTTGAGGAA GCAGAGAATG AGAGAATGCA TCTTATGACA 
    TTCATGGAAG TCGCGAAACC GAAATGGTAC GAGAGAGCGC TCGTGATCAC 
    TGTGCAAGGA GTCTTCTTCA ACGCTTATTT CCTTGGTTAC TTAATCTCTC 
    CCAAGTTTGC TCATCGTATG GTTGGGTACC TTGAAGAAGA AGCGATCCAT 
    TCTTATACTG AGTTTCTCAA GGAACTTGAC AAAGGTAACA TTGAGAATGT 
    TCCTGCTCCG GCTATTGCTA TTGATTACTG GAGGCTTCCT GCTGATGCGA 
    CACTTCGTGA TGTTGTGATG GTTGTTCGTG CTGACGAGGC TCATCACCGT 
    GATGTAAACC ATTTTGCATC TGATATTCAC TACCAAGGTC GTGAACTAAA 
    GGAAGCTCCA GCTCCAATTG GGTATCATTG ATTCGATTAA AAGAAGAGCT 
    TTTTCTCAAG TTTAAAACTT TGTTCTAAAG AATTTAAGTT CTTTGACTTG 
    TATATACATC ATCACCTCTG CTTAAGCCAT ACTTGGATTC GGCTTTCTTT 
    GAATGTTGCT ACGAATGTTC TGATTTCTTC TTTACTTTTC CTGTCAATGG 
    GCTTTTGGGC TTATCTTTTG CTATTGTATG GCCTTGCTAT TTAGAATGAG 
    AGTAATAGTT TGTAAAAAAA AAAAAAAAA

    Gene models with high sequence identity

    1. AT3G22370.1 [+] show detail - alternative oxidase 1A
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Alternative oxidase 2.5e-87
    HMMPIR Alternative oxidase 5.7e-157

    See the detailed result >

    AT3G22370.1

    Model type
    Protein coding
    Short Description
    alternative oxidase 1A
    Curator Summary
    Encodes AOX1a, an isoform of alternative oxidase that is expressed in rosettes, flowers, and root. The alternative oxidase of plant mitochondria transfers electrons from the ubiquinone pool to oxygen without energy conservations. It is regulated through transcriptional control and by pyruvate. Plays a role in shoot acclimation to low temperature. Also is capable of ameliorating reactive oxygen species production when the cytochrome pathway is inhibited. AOX1a also functions as a marker for mitochondrial retrograde response.
    Computational Description
    alternative oxidase 1A (AOX1A); FUNCTIONS IN: alternative oxidase activity; INVOLVED IN: oxidation reduction, cellular respiration, response to cold, response to stress, mitochondria-nucleus signaling pathway; LOCATED IN: mitochondrion; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Alternative oxidase (InterPro:IPR002680); BEST Arabidopsis thaliana protein match is: alternative oxidase 1B (TAIR:AT3G22360.1); Has 1299 Blast hits to 1299 proteins in 245 species: Archae - 0; Bacteria - 109; Metazoa - 12; Fungi - 194; Plants - 380; Viruses - 0; Other Eukaryotes - 604 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR