F23712

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23712

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23712

Determination of introduced cDNA(s)

  • RAFL08-11-E19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-11-E19 - Resource: pda04645

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-11-E19 - full reading 
    AGGTGATCTG AATTTGTCAG TGAGGAACAT AAAGAACTGG GGAACATTTT 
    GGATATTTTT TCTCCAAGTG AAGTTAAAAG GAACAAGGAG ACAAGGTTGG 
    AGTCGACCAA TCATTGATCG AGCTAGAGAA ATCTGGCTAC AATTCAATTT 
    CAGATGAGGT TTTCAAAAAC ACAGAAGATG AATGTTCAAA TAGCATAAGA 
    AGCTGTGAAT TTTCTTCTTT CTTTTTTGTC CAATGGGAAC AATGGCAGAA 
    TTGGGAACCA TGGGAAAATT TGGAGCCATG GCAGAAGAGC AGCAAGTTAA 
    CCAGATGATC ATGGATAAAC AATCAGTAGA AGAATGGCTA TCGCGCGTCA 
    ACTCGCTAAT ACCATCCGTC CTCAGCAAGG CAAAAACGGT TAAGAAGTTT 
    ACAGGAAGAT GGAAGACGAT CATCTCGAAG ATCGAACAGA TACCAGCTTG 
    TTTATCTGAC CTCTCAAGCC ACCCTTGCTT CTCCAAGAAC AAGCTCTGCA 
    ACGAGCAGTT GCAATCTGTG GCTAAGACGC TTAGTGAAGT GATAGAGCTT 
    GCAGAGCAGT GTTCAACTGA CAAGTATGAA GGGAAGCTGC GTATGCAGAG 
    CGATCTAGAT TCTTTATCCG GAAAACTGGA TTTGAATCTA AGAGACTGTG 
    GGGTTTTGAT CAAGACCGGC GTTCTCGGTG AAGCTACGTT ACCTCTTTAC 
    ATTTCAAGTT CATCGGAAAC ACCCAAAATT TCCAGTTTAA AAGAACTTCT 
    AGCGAGGCTA CAGATCGGTC ACTTGGAATC AAAACACAAT GCTCTCGAAA 
    GCCTCCTTGG TGCAATGCAA GAAGATGAAA AGATGGTTCT TATGCCTTTG 
    ATCGGACGAG CCAACGTTGC AGCTTTAGTT CAGCTGCTAA CAGCAACTTC 
    GACAAGAATC AGAGAGAAAG CGGTGAATCT GATCAGTGTA TTAGCAGAAT 
    CAGGACACTG CGACGAATGG CTTATCTCCG AAGGTGTATT GCCTCCGTTA 
    GTGAGACTAA TCGAATCAGG GAGTCTTGAA ACCAAAGAAA AAGCTGCGAT 
    TGCGATCCAG AGACTGTCCA TGACAGAGGA AAACGCACGG GAAATCGCAG 
    GACACGGCGG AATCACACCG CTTATAGATC TCTGTAAAAC AGGGGATTCT 
    GTGTCACAAG CTGCGTCTGC AGCTGCTCTG AAGAACATGT CAGCAGTTTC 
    AGAGCTGAGA CAATTGCTTG CGGAAGAAGG AATAATTAGA GTCTCGATCG 
    ATCTTCTAAA CCATGGGATA TTGTTAGGAT CAAGAGAACA CATGGCCGAG 
    TGTTTGCAGA ATCTCACTGC AGCGAGCGAC GCTCTACGTG AAGCCATTGT 
    CTCAGAAGGC GGAGTTCCGA GTCTCTTGGC TTATCTCGAC GGTCCGTTGC 
    CGCAACAACC GGCGGTAACG GCACTGAGAA ATCTAATCCC GTCGGTGAAT 
    CCAGAGATAT GGGTGGCTCT CAATTTGCTT CCACGATTGA GGCATGTACT 
    CAAGTCAGGA TCTTTAGGCG CGCAACAAGC AGCAGCATCG GCTATTTGCC 
    GTTTCGCTTG CTCGCCGGAG ACGAAAAGGC TAGTGGGAGA ATCCGGTTGC 
    ATCCCGGAGA TCGTGAAACT TCTGGAATCG AAGTCAAACG GATGTCGAGA 
    AGCGGCGGCT CAGGCGATCG CTGGATTGGT AGCGGAAGGA AGGATTCGAC 
    GGGAACTGAA GAAAGACGGG AAGAGCGTTC TGACGAATTT GGTGATGTTA 
    TTGGATTCAA ACCCTGGAAA CACGGCGAAG AAGTACGCCG TGGCGGGGCT 
    GTTGGGGATG TCGGGAAGCG AGAAGAGTAA GAAAATGATG GTGTCGTACG 
    GAGCAATAGG GTATCTGAAG AAGCTGTCGG AGATGGAAGT AATGGGCGCC 
    GATAAGCTTC TCGAGAAGCT TGAAAGAGGA AAGCTAAGAA GCTTCTTTCA 
    CCGGTAAAAC GAACGATGCG GAGACATTGA AGCAGCCAAG ATAAAAAGTG 
    TAATATTGTC TGATGTAAGT TTATTAACCG TTAGTTAAAC TTTACTAGTA 
    ATTAAAAAGT GTTCTTTGGG CTGAAAAAAA AAAAAAAAA

    Gene models with high sequence identity

    1. AT1G01830.2 [+] show detail - ARM repeat superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ANKYRIN-REPEAT-ARM DOMAIN PROTEIN 4e-10
    HMMPanther BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAIN 4e-10
    ProfileScan Armadillo 11.287
    HMMSmart Armadillo 160
    HMMSmart Armadillo 28
    HMMSmart Armadillo 2
    HMMSmart Armadillo 260
    HMMSmart Armadillo 1.3
    HMMSmart Armadillo 0.57
    Gene3D Armadillo-like helical 6.9e-48
    HMMPfam Armadillo 0.00013
    HMMPfam Armadillo 7e-06
    superfamily Armadillo-type fold 3.3e-56

    See the detailed result >

    AT1G01830.2

    Model type
    Protein coding
    Short Description
    ARM repeat superfamily protein
    Computational Description
    ARM repeat superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G45720.2); Has 3429 Blast hits to 2144 proteins in 215 species: Archae - 2; Bacteria - 14; Metazoa - 502; Fungi - 465; Plants - 2072; Viruses - 0; Other Eukaryotes - 374 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR