F23715

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23715

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23715

Determination of introduced cDNA(s)

  • RAFL11-02-D14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL11-02-D14 - Resource: pda07029

    full reading [+] show sequence

    Nucleotide sequence: RAFL11-02-D14 - full reading 
    ATTCTTCTCC TCCTATCGGA CTTTGCCACA CCAGATCGGA AAATCCCAAT 
    CCTCTTTTCC TTTGTTTTTT TTGCTATCTT CAATCAAAAA CTCTCCGACA 
    GATTCAATGA AGCAGCAAAA GAGATAAAAC CCTAACAAAA GTAAACAATC 
    GGAGTTTTAA TCTTCTTCTT CTTCGGAGCC GGAGTTTTGT CTGATCTGTC 
    GGAGAGGACG TGTCGGCATC TATTAAAATC CTAGCTGGAC TTCCACATCA 
    CTTTACTCAA TTAGAAGCTG TTTTGAGTAA CACAAGTAAG TAGTAAGCTT 
    ATAAAACAAT GGGAACGAGC GAAGACAAGA TGCCATTTAA GACTACCAAA 
    CCAACATCTT CGGCTCAGGA AGTTCCTCCC ACACCGTATC CAGATTGGCA 
    AAATTCAATG CAGGCTTATT ATGGCGGAGG AGGTACTCCA AATCCTTTTT 
    TCCCATCCCC AGTTGGATCT CCTAGTCCTC ACCCCTATAT GTGGGGTGCT 
    CAACACCATA TGATGCCGCC TTATGGCACC CCAGTTCCGT ACCCAGCAAT 
    GTATCCCCCG GGGGCAGTCT ATGCTCATCC TAGCATGCCC ATGCCTCCTA 
    ATTCTGGTCC TACCAACAAG GAGCCTGCGA AGGACCAAGC TTCTGGCAAG 
    AAGTCAAAGG GGAACGCGAA AAAAAAGGCT GAAGGAGGTG ATAAAGCGCT 
    CTCTGGTTCA GGGAACGATG GTGCCTCTCA TAGTGATGAA AGTGTCACAG 
    CGGGTTCATC TGATGAAAAT GATGAGAATG CCAATCAACA GGAACAGGGT 
    TCAATTCGAA AGCCAAGCTT TGGACAGATG CTTGCTGACG CAAGTTCTCA 
    AAGTACGACT GGTGAAATCC AAGGTTCGGT GCCCATGAAG CCGGTAGCCC 
    CGGGGACTAA TCTGAATATC GGGATGGACT TATGGTCTTC CCAAGCTGGT 
    GTACCAGTGA AGGATGAACG AGAGCTCAAG CGGCAGAAGA GGAAACAATC 
    TAACCGTGAA TCCGCTAGGC GGTCTAGATT GCGGAAGCAG GCCGAATGCG 
    AACGACTTCA ACAAAGAGTA GAGAGTTTGT CGAACGAGAA TCAAAGCCTG 
    AGAGATGAGC TACAGAGACT CTCAAGCGAA TGTGATAAGC TCAAGTCTGA 
    GAACAACTCA ATCCAGGATG AGTTGCAGAG AGTACTTGGA GCAGAGGCTG 
    TAGCTAATCT AGAACAGAAT GCTGCTGGGT CGAAAGATGG TGAAGGAACA 
    AATTAACACT TAGGAAAATT GGAACTTTAC AACGGATTAT TGGGATTTTT 
    CAACACCGGA TAAAAAAAAC TGAGTCCAAA GTCATTTGAG ATTACGTAAC 
    TATACAATCG TTTGACATTT TTGTGTAATA GAGATTTGAC CTACAAGACT 
    GTAGAAGCTG CAAAAGCTAC GATTACACTT TGTTTT

    Gene models with high sequence identity

    1. AT4G36730.1 [+] show detail - G-box binding factor 1
      E-value: 0; Score: 99.86

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMSmart Basic-leucine zipper (bZIP) transcription factor 3.3e-22
    Gene3D no description 0.00012
    PatternScan Basic-leucine zipper (bZIP) transcription factor 0
    ProfileScan Basic-leucine zipper (bZIP) transcription factor 13.679
    HMMPanther JUN DIMERIZATION PROTEIN-RELATED HUMAN 7.6e-05
    HMMPanther FOS TRANSCRIPTION FACTOR-RELATED 7.6e-05
    HMMPfam G-box binding, MFMR 2.4e-38
    HMMPfam bZIP transcription factor, bZIP-1 1.2e-21

    See the detailed result >

    AT4G36730.1

    Model type
    Protein coding
    Short Description
    G-box binding factor 1
    Curator Summary
    member of a gene family encoding basic leucine zipper proteins (GBFs) which bind the G-box
    Computational Description
    G-box binding factor 1 (GBF1); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), G-box binding, MFMR (InterPro:IPR012900), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: basic region/leucine zipper transcription factor 16 (TAIR:AT2G35530.1); Has 3905 Blast hits to 3842 proteins in 356 species: Archae - 8; Bacteria - 123; Metazoa - 1421; Fungi - 442; Plants - 1419; Viruses - 137; Other Eukaryotes - 355 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR