F23723

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23723

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F23723

Determination of introduced cDNA(s)

  • RAFL06-86-N14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-86-N14 - Resource: pda07744

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-86-N14 - full reading 
    AAACACTAAA ACGAAGCTCA AAAGTATGGC TACAAGAGCT TCGTTCAAAC 
    CTAAACATTT TCTGGGGAAC AATCGAATCC GAAATCTCCA AAAACGGTGC 
    CGCTTCATAT ATCTTCCCTC TCCAACGTTG CATCTTCAGT TTCCTCTGCG 
    CCTCTCTCGC CGGCGTTGAC GCTTCCGTAT CGCCGGACAT CGCTGAGAAC 
    GGTTGGAAAA CAATCAATAC TTGGCTTGCG TTGCAAGTTA TTCCCACTGC 
    TAAACTTGGC GTAGTTCCTC AGCCTCTTGA AGAGATTTTA CTTCATACTT 
    GGCCTTATCC TTCTCTCTTA ATCGCCGGAA ATTACAAAAA GCTTTACAAT 
    TTCATCGACG AGAACGCCGG AGATTGTCTC CGGTTAGGTC AAGAAGAATT 
    CGGGTTGACC CGAGATGAGG CTATTCAAAA TCTTCTCTTT GTTTTAGGTT 
    TTAATGCCTA CGGGGGCTTT TCCGTCTTCT TACCTTCTTT GATCGGGAGA 
    ATAACCGGCG ACAATTCCGG TTTACAGGAG AGGATTAGAA CCGAAGTCAG 
    GAGAGTTTGC GGATCCGGGT CGGATCTTAA TTTCAAGACG GTTAACGAAA 
    TGGAGCTGGT TAAATCCGTG GTTTACGAAA CGCTGCGTTT TAGTCCTCCG 
    GTTCCGCTGC AATTCGCACG TGCGAGGAAA GATTTTCAGA TAAGTTCACA 
    CGATGCTGTT TTTGAGGTCA AGAAAGGTGA GCTTCTTTGT GGTTATCAGC 
    CGCTTGTGAT GAGAGACGCT AATGTTTTTG ACGAACCGGA GGAATTTAAA 
    CCGGACCGGT ATGTAGGTGA GACCGGGTCT GAATTGCTGA ATTATCTCTA 
    CTGGTCTAAC GGTCCACAAA CCGGTACCCC GAGCGCGTCG AACAAACAGT 
    GTGCAGCTAA GGACATTGTC ACTCTCACGG CTTCCTTGCT CGTTGCCGAT 
    TTATTTCTCC GGTATGATAC GATTACTGGT GACTCCGGTT CAATTAAAGC 
    TGTTGTTAAA GCTAAATAAG TTAAAGATTG ATTAGTGTTT AATGTTATGT 
    AATCAATCTT CAACGGTTTC ATTTGTTCGG AGTGTATAAA TTATATGTAA 
    ACTAAAATAA TCCGAATTGA AACTCAAATT GTTATGGTAA AAAAAAAAAA 
    AAAA

    Gene models with high sequence identity

    1. AT4G15440.1 [+] show detail - hydroperoxide lyase 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Cytochrome P450 1.4e-15
    Gene3D Cytochrome P450 7.79998304125632e-25
    superfamily Cytochrome P450 1.1e-32
    HMMPanther Cytochrome P450 1.29999924468183e-19
    FPrintScan Cytochrome P450, E-class, group IV 3.6000003870074e-08
    FPrintScan Cytochrome P450, E-class, group IV 3.6000003870074e-08
    FPrintScan Cytochrome P450, E-class, group IV 3.6000003870074e-08

    See the detailed result >

    AT4G15440.1

    Model type
    Protein coding
    Short Description
    hydroperoxide lyase 1
    Curator Summary
    Encodes a hydroperoxide lyase. Also a member of the CYP74B cytochrome p450 family. In the ecotype Columbia (Col) the gene contains a 10-nucleotide deletion in its first exon that causes it to code for a truncated protein that results in a non-functional hydroperoxide lyase.
    Computational Description
    hydroperoxide lyase 1 (HPL1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; INVOLVED IN: fatty acid metabolic process, response to wounding; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403); BEST Arabidopsis thaliana protein match is: allene oxide synthase (TAIR:AT5G42650.1); Has 6712 Blast hits to 6702 proteins in 615 species: Archae - 25; Bacteria - 392; Metazoa - 3265; Fungi - 548; Plants - 2246; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR