F23727

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23727

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23727

Determination of introduced cDNA(s)

  • RAFL09-32-L06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-32-L06 - Resource: pda05948

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-32-L06 - full reading 
    AGGGCAGAGT GACTGATACC AAAGGAGAAA CAACAAAGAG ACGAACTGAA 
    GAAAAACCTC TCGGAAGAAG ATGAGCAATT GGAAAACTCT TCTCCTTCGC 
    ATCGGCGAAA AGGGACCTGA GTACGGCACT TCCTCCGACT ACAAAGACCA 
    CATCGAGACT TGTTTCGGTG TCATTCGTAG AGAAATCGAG CGTTCTGGAG 
    ATCAAGTTTT GCCTTTTCTA CTACAATGTG CTGAACAATT GCCTCATAAG 
    ATTCCTTTGT ATGGGACTTT GATTGGTTTG TTGAACTTGG AGAATGAAGA 
    TTTTGTCCAG AAGCTAGTAG AAAGTGTCCA CGCTAATTTC CAGGTCGCTT 
    TAGATTCTGG CAACTGCAAC AGTATCCGTA TATTGCTTCG CTTTATGACT 
    TCCCTGTTGT GCAGTAAGGT TATTCAACCT GCTTCTTTGA TTGTCGTCTT 
    CGAAACATTG CTATCATCTG CTGCCACTAC TGTGGATGAA GAGAAAGGAA 
    ATCCATCATG GCAGCCACAA GCTGACTTTT ACGTTATATG CATCTTGTCC 
    AGCCTCCCGT GGGGAGGATC AGAACTCGCT GAGCAAGTTC CTGATGAGAT 
    TGAAAGAGTG TTAGTTGGGA TACAAGCTTA TTTGAGCATC CGAAAGAATT 
    CTTCCACCTC TGGGTTAAAC TTTTTTCACA ACGGAGAATT TGAAAGCAGC 
    CTTGCAGAGA AGGATTTCGT GGAGGATCTA TTGGATCGAA TTCAGTCTCT 
    GGCTTCCAAT GGATGGAAAC TTGAAAGCGT ACCTAGGCCT CATCTCTCGT 
    TTGAAGCTCA ACTCGTTGCT GGAAAGTTTC ATGAGCTACG TCCCATTAAA 
    TGTATGGAAC AACCGAGTCC ACCTTCTGAT CATTCGAGGG CATACAGTGG 
    CAAGCAAAAG CATGATGCAT TGACGAGATA TCCCCAGAGA ATTCGTAGGT 
    TGAATATATT TCCAGCTAAT AAAATGGAGG ATGTACAACC AATTGATCGT 
    TTTGTCGTGG AGGAGTATTT GCTGGATGTG CTCTTCTATT TGAATGGATG 
    TCGGAAGGAG TGTGCATCCT ACATGGCTAA TCTTCCTGTT ACATTTCGGT 
    ACGAGTATCT TATGGCAGAG ACACTATTTT CTCAGATACT GCTGCTACCC 
    CAGCCACCAT TCAAGACTCT TTATTATACA CTCGTGATTA TGGATCTTTG 
    TAAGGCTCTT CCGGGTGCCT TTCCTGCTGT TGTTGCTGGC GCTGTTCGTG 
    CACTATTTGA GAAAATATCC GACTTAGACA TGGAATCCAG GACGCGTCTT 
    ATCCTCTGGT TTTCTCACCA CTTATCCAAC TTCCAATTCA TCTGGCCGTG 
    GGAAGAGTGG GCTTTTGTGT TGGATCTTCC CAAGTGGGCC CCTAAGCGTG 
    TATTTGTTCA GGAGATTTTG CAAAGAGAAG TACGCTTGTC TTACTGGGAT 
    AAAATTAAGC AGAGCATTGA GAATGCGACT GCCCTAGAAG AATTACTTCC 
    TCCAAAAGCT GGTCCGAATT TTATGTATTC CTTGGAAGAA GGTAAAGAGA 
    AAACAGAAGA ACAGCAATTG TCAGCCGAAT TGAGCAGGAA GGTCAAGGAA 
    AAACAAACCG CACGTGACAT GATAGTGTGG ATTGAAGAAA CGATATATCC 
    AGTTCATGGT TTTGAAGTTA CTCTTACAAT AGTTGTACAG ACCTTACTTG 
    ACATCGGATC AAAAAGTTTC ACTCATTTGG TCACTGTCCT GGAGCGATAT 
    GGCCAAGTAT TTTCAAAGCT TTGTCCTGAT AACGATAAGC AGGTGATGCT 
    ATTATCTCAA GTGAGTACAT ACTGGAAAAA CAATGTACAA ATGACGGCGG 
    TGGCAATTGA TAGGATGATG GGTTATAGAC TAGTATCTAA TCAGGCAATT 
    GTTAGATGGG TGTTCTCTCC AGAAAATGTT GATCAGTTTC ATATGTCTGA 
    TCAGCCATGG GAGATACTTG GCAATGCTCT TAACAAGACT TATAACCGTA 
    TCTCTGATTT GAGGAAAGAT ATATCAAACA TTACGAAAAA TGTTTTGGTT 
    GCTGAGAAAG CTTCAGCCAA TGCACGAGTA GAGTTGGAGG CTGCTGAGAG 
    CAAACTTTCC CTAGTGGAAG GTGAACCCGT TCTTGGTGAG AATCCAGCGA 
    AGATGAAGCG TTTAAAATCA ACAGTGGAGA AGACAGGGGA AGCGGAGTTA 
    TCTCTTCGGG AGTCCCTAGA GGCAAAAGAG GCTCTTCTTA ACAGAGCTCT 
    CTCTGAGACC GAGGTTTTAC TGCTCTTGCT GTTCCAAAGT TTCTTAGGTG 
    TACTGAAGGA ACGGCTCCCA GATCCAACTA AAGTGAGATC AGTGCAGGAT 
    CTAAAATCTA TAGGTGCTGA AGATGACAAG CCATCTGCGA TGGACGTGGA 
    CAGCGAGAAT GGAAACCCAA AGAAGAGTTG CGAAGTCGGT GAGAGAGAAC 
    AGTGGTGCTT ATCAACACTT GGCTATCTCA CGGCATTTAC AAGGCAATAT 
    GCGAGCGAGA TATGGCCTCA CATGGAGAAG TTGGAGTCAG AAGTGTTCTC 
    GGGTGAAGAT GTGCATCCTC TCTTTCTCCA AGCCATATCT TCTGCACTTC 
    AATTCCCATT ACATTAATCT TCCTCTTTCA ATCTCAATCA AACCTGTCTC 
    TTTTGTTTTT TGTTATGAGA TTCTGATTCT GACATCAAGT TATTAGGAAA 
    TTGAAAAGAG TCAAAAAACA AGAGTTTAAA CTTCT

    Gene models with high sequence identity

    1. AT2G13540.1 [+] show detail - ARM repeat superfamily protein
      E-value: 0; Score: 99.96

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart MIF4G-like, type 3 3.6e-32
    HMMPfam MIF4G-like, type 2 1.6e-55
    HMMPfam MIF4G-like, type 1 2.3e-40
    HMMPfam MIF4G-like, type 3 1.7e-31
    Gene3D MIF4-like, type 1/2/3 7e-81
    Gene3D MIF4-like, type 1/2/3 9.9e-57
    Gene3D MIF4-like, type 1/2/3 3.2e-70
    superfamily Armadillo-type fold 5.6e-83
    superfamily Armadillo-type fold 1.7e-79
    superfamily Armadillo-type fold 1.8e-64
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPanther CAP BINDING PROTEIN 0
    HMMPanther CAP BINDING PROTEIN 0

    See the detailed result >

    AT2G13540.1

    Model type
    Protein coding
    Short Description
    ARM repeat superfamily protein
    Curator Summary
    Encodes a nuclear cap-binding protein that forms a heterodimeric complex with CBP20 and is involved in ABA signaling and flowering. Mutants are early flowering and exhibit hypersensitive response to ABA in germination inhibition.Loss of ABH1 function results in abnormal processing of mRNAs for several important floral regulators (FLC, CO, FLM). Analysis of loss of function mutations suggests a role in pri-miRNA processing and mRNA splicing. Note that two different mutant alleles were given the same name abh1-7 (Kuhn et al 2007; Kim et al 2008). To avoid confusion, abh1-7 described in Kim et al (2008) has been renamed abh1-107 (other names: ensalada-1, ens-1).
    Computational Description
    ABA HYPERSENSITIVE 1 (ABH1); CONTAINS InterPro DOMAIN/s: MIF4G-like, type 2 (InterPro:IPR015174), MIF4G-like, type 1 (InterPro:IPR015172), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), MIF4-like, type 1/2/3 (InterPro:IPR016021); Has 514 Blast hits to 510 proteins in 229 species: Archae - 0; Bacteria - 96; Metazoa - 188; Fungi - 131; Plants - 55; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR