F23735

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23735

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23735

Determination of introduced cDNA(s)

  • RAFL02-05-J08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-05-J08 - Resource: pda02233

    full reading [+] show sequence

    Nucleotide sequence: RAFL02-05-J08 - full reading 
    GTAGATCTAT TTCCGCATCT GCTTAAACAC CTACATCGTC GTAGATCGCA 
    AACCATGGCC GTCGCTGTAG CTAAGCTTCT GATCTCCGCC ATGGCGGTTT 
    TCATGCTTGT TTCTGCTTCG TTCGCGACCT CGGAAGTGCC GTTCATGGTG 
    GTTCACAAGA AAGCCACTCT CAACAGGCTC AAATCTGGCG CCGAACGCGT 
    CTCCGTTTCC TACGACATCT ATAACCAAGG ATCCTCGTCG GCGTATGATG 
    TGACTCTGAC AGATAATAGC TGGGATAAAA AGACTTTTGA AGTTGTTAAT 
    GGAAACACTT CAAAATCATG GGAAAGACTT GATGCAGGAG GTATTCTGTC 
    TCATTCTATC GAATTGGAGG CCAAGGTTAA AGGAGTCTTC TACGGTGCTC 
    CTGCTGTCGT TACTTTCCGC ATCCCCACTA AGCCAGCTCT TCAGGAAGCA 
    TACTCAACTC CACTACTACC TCTAGATATC CTCGCAGACA AACCTCCAAC 
    GAAACCTTTG GACGTGGCCA AGAGGTTGCT GGCGAAATAT GGATCACTCG 
    TCTCCGTGAT CTCCATGGTG GTTTGTTTCA TATACTTGGT GGCAACACCT 
    AAGTCCAACG TATCAAAGGC AAGCAGCAAG AAGAAGCGTT AAGTTAGTGA 
    AATGAAAGGT GAGAAAGGTT GGTACGGTGC TGTTTTCTGT TTAACAGTTA 
    AACACAGTTT CAAAACTTGT AAGAATTAGA GAACACACTT TAATTTTGGT 
    GTTGCAGAGG ACATACTTCA AGTTCAAAGA GTTATTTTGG TTTTACTTAA 
    AAAAAAAAAA AAAAAAAAAA AAAG

    Gene models with high sequence identity

    1. AT5G14030.1 [+] show detail - translocon-associated protein beta (TRAPB) family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Translocon-associated beta 5.3e-95
    HMMPfam Translocon-associated beta 3.6e-58

    See the detailed result >

    AT5G14030.1

    Model type
    Protein coding
    Short Description
    translocon-associated protein beta (TRAPB) family protein
    Computational Description
    translocon-associated protein beta (TRAPB) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated beta (InterPro:IPR008856); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR