F23809

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23809

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23809

Determination of introduced cDNA(s)

  • RAFL09-31-E09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-31-E09 - Resource: pda05840

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-31-E09 - full reading 
    ATCCGCCGGA AAATTCGTAA ATTTGACCCT TCGTCTTCGG AAATGGCGGC 
    TATTTCTCCG GCGAATGCAA CCACCGCTGC TTCACTCTCC CTGCCTCAAT 
    TTAGCTCAAC TTCTTCCTCG TTATCTTCTT CTTCGTCTCC ATCGTTTCTT 
    AATTTCAAAA CTGCTTCAGT CAGTAATCGC TGCATCAAGT GCGGAGTCAG 
    AAGCTTAGAG AACCACTCTG GTCACCGGAG CCTCGATTTC TTATCCAATG 
    GGGATCCGAT CAGCCTAATT AATCCGAATT CATCGTCTCC TATAACCATG 
    GCCGCGGCGA CGTCGGAATC CGGTTCGAAG AGCTCTAAGC GCGTCTGTCT 
    CTTCCACAGC GACGAGACTA GAGATCTCGC CGAGAGAATC GTCGCAAAAT 
    CTGATTGCAT TGAGCTACGA AGCATCAATT GGAAGAAATT TGATGATGGA 
    TTCCCTAATT TGTTCATACA AAATGCTCAA GGCATTCGTG GGCAGCATGT 
    TGCTTTCTTG GCTTCATTCA GTTCACCTGC TGTGATCTTC GAGCAGCTTT 
    CGGTTATTTA TGCTCTGCCT AAGCTTTTTG TTTCTTCGTT TACACTTGTT 
    CTTCCATTCT TTCCTACTGG AACTTCTGAG AGAATGGAAG ACGAAGGAGA 
    TGTGGCCACT GCTTTTACTC TCGCTAGGAT ACTCTCTAAT ATTCCGACTT 
    CGAGAGGAGG ACCGACTAGC CTAGTGACCT TCGATATACA TGCCTTGCAG 
    GAAAGATTCT ACTTTGGTGA TACTATACTT CCATGCTTTG AAAGTGGTAT 
    ACCATTGCTC AAGAGCAGAC TCCAGAGTCT ACCTGATTCT GATAACATAT 
    CTATTGCATT CCCAGATGAT GGAGCATGGA AGCGTTTCCA CAAGCAACTC 
    CAACATTATC CAACGATTGT TTGCAACAAA GTAAGAATGG GAGACAAACG 
    AATAGTGCGT ATCAAAGAGG GAGACGCTGA AGGAAGGCAC GTCGTGATTG 
    TTGATGATTT GGTTCAGTCG GGTGGCACAT TAATCGAATG CCAGAAAGTC 
    TTAGCTGCAC ATGGAGCAGC GAAGATAAGC GCATATGTAA CACACGGGAT 
    CTTCCCCAGG AGTTCATGGA AACGTTTCAA GCTTGACACC AAAGGTGATC 
    CCGCGGAAGG TCTGAGCTAT TTCTGGATCA CAGACTCGTG TGGGATGACT 
    GTGAAAGAGG TGATGAATAA ACCTCCTTTT GAAGTTCTTA GCCTGGCTGG 
    CTCCATAGCT TCTGCTCTTC AAGTTTAAGC TTATGTGATT CGAGAAGAAA 
    TCCAGCCGCA AGTAATTTTT GGGTTTGAAC AAATCTGATT TATAAACTTT 
    GGTGTATAGT TCTCGATCAA AGCATTTTCC ACGGAAGAGG TTATTTGTTG 
    TTAATGTTCT GTAGGAAAAT CCAATAATGT AATAATGTTT CTTCTGTCAA 
    AGAGAGAAAA AAAAAACAAT GTTTCATTTC ACTTCTTTTA TACTTGTTGA 
    TAGACAGG

    Gene models with high sequence identity

    1. AT1G10700.1 [+] show detail - phosphoribosyl pyrophosphate (PRPP) synthase 3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther RIBOSE-PHOSPHATE PYROPHOSPHOKINASE-RELATED 0
    HMMPanther RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 0
    HMMPfam Phosphoribosyltransferase 8.9e-08
    superfamily PRTase-like 3.1e-21
    superfamily PRTase-like 1e-16
    HMMTigr Phosphoribosyl pyrophosphokinase 1.7e-21
    Gene3D no description 3.8e-06
    Gene3D no description 1.4e-18

    See the detailed result >

    AT1G10700.1

    Model type
    Protein coding
    Short Description
    phosphoribosyl pyrophosphate (PRPP) synthase 3
    Curator Summary
    Encodes a P-independent phosphoribosyl pyrophosphate (PRPP) synthase.
    Computational Description
    phosphoribosyl pyrophosphate (PRPP) synthase 3 (PRS3); FUNCTIONS IN: magnesium ion binding, ribose phosphate diphosphokinase activity; INVOLVED IN: nucleotide biosynthetic process, nucleoside metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Phosphoribosyl pyrophosphokinase (InterPro:IPR005946); BEST Arabidopsis thaliana protein match is: Phosphoribosyltransferase family protein (TAIR:AT2G42910.1); Has 9536 Blast hits to 9535 proteins in 2732 species: Archae - 207; Bacteria - 5887; Metazoa - 527; Fungi - 344; Plants - 201; Viruses - 8; Other Eukaryotes - 2362 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR