F23814

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23814

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23814

Determination of introduced cDNA(s)

  • RAFL09-49-J01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-49-J01 - Resource: pda09841

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-49-J01 - full reading 
    AAAAAACACG GCTCTCTCTT CTTCATCATC ATCATCATCT TCCTCTCGAT 
    CGGAAAATAG TCAAAAGTTT CTATAAATTG TTGAATCAAA GCAGAGAAGA 
    AGAAGAAGAC GATCATGAAT CCAGATTCCG ATTATCCTCA TCTCCCTAAC 
    ATCAAGATCC ACCATCCTTC ATCTCCTCGT CACTCTCACC ACCACTCTTC 
    CTCCACTCCT TCCGCCGCTA CTCCTACCCC AACCGCCGGT GCTCGCCGTA 
    AGATCGGAGT CGCCGTTGAC CTTTCCGAAG AAAGCGCTTT CGCTGTTCGC 
    TGGGCTGTCG ATCATTACAT CCGTCCCGGA GACGCCGTCG TCATTCTCCA 
    CGTTTCTCCA ACCTCCGTTC TCTTCGGCGC CGATTGGGGA CCTCTCCCTC 
    TCCAAACTCC TCCTCCTCCT TCCGCCGCTA CCGATCCCGG AGCTCAGCCG 
    AAGCCTAGTC AGGAAGATTT CGATGCGTTT ACTTCTTCCA AAGTAGCGGA 
    TCTAGCGAAG CCGTTGAAGG AAGCTGGGTT TCCTCATAAG ATCCATATAG 
    TGAAAGATCA CGATATGAGA GAGAGGCTTT GCTTAGAGAC TGAAAGGCTT 
    AATCTAAGCG CCGTGATAAT GGGAAGCAGA GGATTTGGTG CTGAGAAGAG 
    AGGAAGTGAT GGCAAGCTTG GCTCTGTTAG TGATTATTGT GTTCACCATT 
    GTGTTTGTCC TGTTGTTGTT GTTAGATATC CTGATGATCG TGATGGTCCT 
    GCTCCTCCTG GGAATGTTGG AGCTACCAGG GAAGCTATTG TCACTGTTAA 
    ATCACGTAGG GATGATGACG ATGATGATGA TGAAGATCAT GAGGCTAAGA 
    TTGCTGCTGC TGCTTCCGAT CATCATGAAC ACATCAAAGA TGAGTAAAGT 
    GCCTTAGTAT CTCATCAGGT TCACCCTCTT CACAGTCAGG TACAACGATG 
    GATGAAACAA AACGGATTTG TGCAGAGGAG TGTGTTTGTG TGTTTGTTTA 
    TTGCTATCTT TTGCAATATT GAAAAGTCTC TGGAATCTCC TCTGGATTAT 
    TTATTCCCAG TCCTTGTTCT TCTTATAATT CTCCATGTAT GATTTTCACA 
    TTTAAACAAT GCCCTTTTCC ATGTATGACT TTCACATTTA AACAATACCC 
    TTTTGGGGTT ATGACCTTAA TCTTCAATCT AATTTGATAT CCGATGAGAT 
    ACT

    Gene models with high sequence identity

    1. AT4G27320.1 [+] show detail - Adenine nucleotide alpha hydrolases-like superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Adenine nucleotide alpha hydrolases-like 3.1e-24
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 3.7e-22
    FPrintScan Universal stress protein A 1.4e-06
    FPrintScan Universal stress protein A 1.4e-06
    HMMPfam UspA 3.5e-28

    See the detailed result >

    AT4G27320.1

    Model type
    Protein coding
    Short Description
    Adenine nucleotide alpha hydrolases-like superfamily protein
    Curator Summary
    Contains a universal stress protein domain. Protein is phosphorylated in response to Phytophthora infestans zoospores and xylanase.
    Computational Description
    PHOS34; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to molecule of fungal origin, response to stress; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT5G54430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR