F23818

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23818

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23818

Determination of introduced cDNA(s)

  • RAFL06-70-C23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-70-C23 - Resource: pda17219

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-70-C23 - full reading 
    CCCGAAAACA CAACACAACA CAATATCTTT CAACTCAAAA TCTTTTTCAT 
    TTCTCTGTAT CCTCCTCATA TTTTTATTCT TTTGTAATGA CAGGTTGCTT 
    TAGCTTGTCT GAAGCATTAG AACGAACTTA CAAATCCGGG TTCAAAAGAT 
    CCGGTCTACG ACCCGTAACC ATCGACTTGA AAGATGGAAC CGTAGTCAAC 
    TTTTGGGTAT CCAAAACCAA ACCCGAATCC AAACCCAAAC CTAATCTCCT 
    CCTCATCCAC GGCCTCGGAG CTACTGCCAT CTGGCAATGG TACGACGTAG 
    CTCGCCGTCT CTCACGTTAT TTCAACCTCT ACATCCCCGA CCTAGTCTTC 
    TTCGGCGGAT CTTCCACGAC CCGACCCGAA AGATCCGATA TTTTCCAAGC 
    CCAAACACTC ATGCGGGCCT TAGAAGCCCA ATCCGTCAAA AAGTTTAGCC 
    TCGTCGGTCT TAGCTACGGC GGATTCGTTG GTTATCGAAT GGCGTCGATG 
    TACGCAGACG CGGTGGAGAA GGTGGTGATA TGCTGCGCCG CCGTGTGCGT 
    GGAGGAGAAA GATATGAAAG CCGGTGTTTT CAAGGTGTCG GATCTTGATG 
    AAGCTTCGAA GATTCTTGTG CCGGAGTCTG TGAAAAAGCT CCGGGAACTT 
    ATGGGTTACA TATTTTACAA ACCGGCGTTG GCAAGACTGG TTCCTACTTG 
    TCTTCTCCAT GATTTCATCG AACATGCTTT GACAAGAGAT AATATGGAAG 
    AGAAGAGAGA ACTGATCAAA GCCATACCAA AAGACAGAAT AATCTCAGAG 
    ATTCCAAAGC TCAAACAGCC AACATTGATA ATATGGGGAG AGCATGATCA 
    AGTGTTCCCA TTGGAGATGG GCAAGAGACT TGAGAAGCAT GTAGGAGATA 
    ATGGGAAACT CGTTATCATC AAGAGAACTG GTCATATCTT TAACTTCGAG 
    AAACCTAAAA AGTTTATCAA ACTTCTCAAA TCTTTTCTTC TAGAGACTAG 
    TAAACCACAG ATTCCTGTCT CTAATGTTTG ATTCTTAGTC ATCGTTTTGA 
    AGATCCTCTC ATAAGTAATT TCCAAGGATT AATAACATAT ATATCATTTT 
    CACATTACCA AAAAAAAAA

    Gene models with high sequence identity

    1. AT1G78210.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan ABHYDROLASE 3.5e-10
    FPrintScan ABHYDROLASE 3.5e-10
    FPrintScan ABHYDROLASE 3.5e-10
    FPrintScan ABHYDROLASE 3.5e-10
    FPrintScan Epoxide hydrolase-like 8.7e-05
    FPrintScan Epoxide hydrolase-like 8.7e-05
    FPrintScan Epoxide hydrolase-like 8.7e-05
    FPrintScan Epoxide hydrolase-like 8.7e-05
    Gene3D no description 5e-44
    superfamily alpha/beta-Hydrolases 8.3e-54
    HMMPfam Alpha/beta hydrolase fold-1 2.8e-06
    HMMPfam Alpha/beta hydrolase fold-1 2.3e-09
    HMMPanther ABHYDROLASE DOMAIN CONTAINING 6 5.9e-128
    HMMPanther ALPHA/BETA HYDROLASE RELATED 5.9e-128

    See the detailed result >

    AT1G78210.1

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Computational Description
    alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G09430.1); Has 8308 Blast hits to 8306 proteins in 1517 species: Archae - 98; Bacteria - 5942; Metazoa - 236; Fungi - 70; Plants - 380; Viruses - 0; Other Eukaryotes - 1582 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR