F23903

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23903

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23903

Determination of introduced cDNA(s)

  • RAFL02-02-F05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-02-F05 - Resource: pda02227

    full reading [+] show sequence

    Nucleotide sequence: RAFL02-02-F05 - full reading 
    CAAGTGGTTC GGAGCTGTTT CTAAGAAAAC AACAGGTAGT TCGGATCGGA 
    GCTACGCTTG CAAAACTCAA AACATGGCGA GGGGTTTGAA GAAGCATCTG 
    AAGAGGCTTA ATGCGCCTAA GCATTGGATG CTTGACAAAC TTGGTGGTGC 
    ATTTGCCCCA AAGCCGTCTT CTGGACCACA TAAGTCAAGG GAGTGCCTTC 
    CCCTCGTCCT TATCATCAGG AACAGGTTGG AGTATGCTCT TACCTACCGT 
    GAAGTGATTT CAATCTTGAT GCAAAGGCAT ATCCAAGTTG ATGGGAAAGT 
    CAGGACGGAC AAGACCTACC CTGCTGGTTT CATGGATGTT GTGTCTATCC 
    CCAAGACCAA TGAGAACTTC CGTCTTCTCT ATGATACCAA GGGACGTTTC 
    CGTCTCCACT CCATCAAGGA TGAGGAAGCA AAGTTCAAAC TTTGCAAGGT 
    TCGATCTATC CAGTTTGGAC AGAAAGGCAT TCCTTACCTG AACACTTACG 
    ATGGTCGCAC CATCCGTTAC CCTGACCCGC TCATCAAGCC TAATGACACC 
    ATCAAGCTCG ACCTTGAGGC CAACAAGATT GTCGAGTTCA TCAAGTTTGA 
    TGTTGGCAAT GTTGTGATGG TTACAGGAGG TAGAAACAGA GGGCGTGTTG 
    GTGTGATTAA AAACCGTGAG AAGCATAAGG GAAGCTTTGA GACAATCCAC 
    ATCCAAGATT CAACAGGACA TGAGTTTGCA ACAAGGTTGG GTAATGTGTA 
    CACCATTGGC AAAGGAACAA AGCCATGGGT GTCTCTTCCC AAGGGCAAAG 
    GTATCAAGCT GACTATCATC GAGGAGGCCA GGAAGAGGCT TGCTAGTCAA 
    CAGGCTGCTT AATTTTGTGA TTTTCAGTTC TTTGTTATGC TTCTTTAGAC 
    GTTTCATATT TCCTAGACTC ACTTCGTTTC TTTTGGTACT CTGCTCAGTT 
    TTGAAACTTC TCTTATATTA TTTATTTCAA GAGTTAAAAA CATCT

    Gene models with high sequence identity

    1. AT5G58420.1 [+] show detail - Ribosomal protein S4 (RPS4A) family protein
      E-value: 0; Score: 99.90

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan RNA-binding S4 8.556
    HMMPfam Ribosomal protein S4e, central 5.3e-31
    HMMPfam Ribosomal protein S4e, N-terminal 9.2e-20
    HMMPfam KOW 0.00000042
    HMMPfam RNA-binding S4 0.0000062
    HMMSmart KOW 0.00077
    HMMPIR Ribosomal protein S4e 1.9e-128
    PatternScan Ribosomal protein S4e, N-terminal, conserved site 0
    BlastProDom Ribosomal protein S4e, central 2e-47
    HMMPanther Ribosomal protein S4e 3.8e-195

    See the detailed result >

    AT5G58420.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S4 (RPS4A) family protein
    Computational Description
    Ribosomal protein S4 (RPS4A) family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4e, central (InterPro:IPR013845), Ribosomal protein S4e, N-terminal, conserved site (InterPro:IPR018199), KOW (InterPro:IPR005824), RNA-binding S4 (InterPro:IPR002942), Ribosomal protein S4e, N-terminal (InterPro:IPR013843), Ribosomal protein S4e (InterPro:IPR000876); BEST Arabidopsis thaliana protein match is: Ribosomal protein S4 (RPS4A) family protein (TAIR:AT5G07090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR