F23930

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23930

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23930

Determination of introduced cDNA(s)

  • RAFL11-05-B04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL11-05-B04 - Resource: pda17970

    full reading [+] show sequence

    Nucleotide sequence: RAFL11-05-B04 - full reading 
    CTGGAGCTAA AAACGGTTTC AATCGAATTA AAGTCAATGG CGTCACGTTT 
    ATGTCTTCTC CTTCTCGTTG CGTGTATCGC CGGAGCATTT GCCGGAGACG 
    TCATCGAACT CAATCGATCT CAGAGGGAGT TCGATTATTT CGCTCTATCT 
    CTTCAATGGC CTGGAACCTA TTGCCGTGGA ACTCGCCATT GTTGCTCCAA 
    AAACGCTTGC TGCAGAGGCT CCGATGCTCC AACTCAATTC ACAATTCATG 
    GGTTATGGCC TGACTATAAC GATGGTTCGT GGCCTTCATG TTGTTATCGA 
    TCTGACTTTA AAGAGAAGGA GATTTCAACG TTGATGGATG GTCTTGAGAA 
    GTACTGGCCT AGTCTCAGTT GTGGTTCTCC ATCATCATGC AATGGTGGGA 
    AAGGGTCATT TTGGGGCCAC GAGTGGGAGT TCCATGCTTA ATCTCACAAC 
    CTTTTGCATA ACAAGAAACA TGGGACTTGT TCTTCTCCTG TTTTTCATGA 
    TGAGTATAAT TACTTCCTTA CCACACTTAA TCTCTACTTG AAGCATAATG 
    TCACGGATGT CCTTTATCAA GCTGGCTATG TTGCTTCCAA CAGTGAAAAG 
    TATCCTCTAG GAGGTATCGT AACAGCCATT CAGAATGCAT TTCATATCAC 
    CCCTGAAGTG GTTTGCAAAA GAGATGCAAT CGATGAAATA CGTATATGCT 
    TCTATAAAGA TTTTAAGCCC AGGGACTGTG TTGGTTCACA AGATTTGACA 
    TCTAGAAAGT CATGCCCCAA GTACGTAAGT TTGCCGGAAT ACACGCCATT 
    AGATGGTGAA GCTATGGTTC TGAAGATGCC AACAGAAAGA GAAGCTCTTT 
    GAATCGGAAA AGATGGGAGC TTTGTTATCT TCTGAGAGAC AATACATACA 
    TGTCTCTGAT GTTGTAACTT TACTACCAAA ACCTATAAAG ATTGGCTTAT 
    TTCGTTCTAT TGGATATGTA TCATCATTAC TGGTAAATCA AGTTTCTTTC 
    TAATAATGTA GAAGATCAGA AAAAAAA

    Gene models with high sequence identity

    1. AT2G39780.1 [+] show detail - ribonuclease 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribonuclease T2 5.8e-27
    HMMPfam Ribonuclease T2 9.6e-21
    superfamily Ribonuclease T2 1.4e-29
    superfamily Ribonuclease T2 4.3e-26
    HMMPanther RIBONUCLEASE T2 9.8e-29
    HMMPanther Ribonuclease T2 9.8e-29
    HMMPanther RIBONUCLEASE T2 2.3e-35
    HMMPanther Ribonuclease T2 2.3e-35
    Gene3D Ribonuclease T2 2.8e-28
    Gene3D Ribonuclease T2 1.1e-21
    PatternScan Ribonuclease T2, active site 0

    See the detailed result >

    AT2G39780.1

    Model type
    Protein coding
    Short Description
    ribonuclease 2
    Curator Summary
    S-like ribonuclease
    Computational Description
    ribonuclease 2 (RNS2); FUNCTIONS IN: ribonuclease T2 activity, endoribonuclease activity, RNA binding; INVOLVED IN: aging; LOCATED IN: intracellular, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568), Ribonuclease T2, active site (InterPro:IPR018188); BEST Arabidopsis thaliana protein match is: Ribonuclease T2 family protein (TAIR:AT1G14220.1); Has 2318 Blast hits to 2317 proteins in 471 species: Archae - 0; Bacteria - 380; Metazoa - 295; Fungi - 231; Plants - 1299; Viruses - 5; Other Eukaryotes - 108 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR