F23935

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23935

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23935

Determination of introduced cDNA(s)

  • RAFL05-16-A08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-16-A08 - Resource: pda02661

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-16-A08 - full reading 
    ACACAATCAC AGAACCTAAT CTTCTTCTCC AATCAATCTC AGAGAAAAAA 
    AGAAATGGCA ACAAACCCTA AAGTCTACTT CGACATGACC GTCGGTGGCA 
    AATCCGCCGG TCGTATCGTG ATGGAGCTTT ACGCCGACAC AACACCAGAA 
    ACCGCCGAGA ATTTCAGAGC ACTCTGTACC GGAGAGAGAG GAATCGGTAA 
    ACAAGGTAAG CCATTACACT ACAAAGGATC AAGCTTTCAC CGAGTGATTC 
    CGAAATTCAT GTGTCAAGGA GGTGATTTCA CAGCCGGGAA TGGTACCGGA 
    GGTGAATCTA TCTATGGATC GAAGTTCAAA GACGAGAACT TTATCAAGAA 
    ACATACAGGA CCAGGTATTT TGTCTATGGC TAACGCTGGT GCGAACACGA 
    ATGGATCTCA GTTTTTTATT TGTACTGAGA AGACTTCGTG GCTCGATGGG 
    AAACATGTTG TGTTTGGTCA AGTTGTTGAG GGATTGAATG TTGTTAGAGA 
    TATTGAGAAG GTTGGATCTG ACTCTGGAAG AACTTCTAAG CCTGTTGTCA 
    TTGCTGATTG TGGTCAGATT TCTTAGATCT GTCTGAGATT GTTGATGATG 
    ATGATGATGA TCTTGAGGAT CCAATGGTAG CTTTGTGTTG TTTCTCTTTG 
    ATGTTTTCTG GTTTATGTTT TTGGATTTTG ATGTTTATTG CTGTTGTGAA 
    ACTTTGAGTT TGGCTACCAT TGAATAAGAA GAATGAGAAT

    Gene models with high sequence identity

    1. AT2G16600.1 [+] show detail - rotamase CYP 3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 7e-48
    ProfileScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 45.469
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 2.4e-40
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 2.4e-40
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 2.4e-40
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 2.4e-40
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 2.4e-40
    PatternScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site 0
    HMMPanther CYCLOPHILIN 3.7e-122
    superfamily Cyclophilin-like 4.3e-75
    Gene3D Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 4.2e-68

    See the detailed result >

    AT2G16600.1

    Model type
    Protein coding
    Short Description
    rotamase CYP 3
    Curator Summary
    Encodes cytosolic cyclophilin ROC3.
    Computational Description
    rotamase CYP 3 (ROC3); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, signal transduction; LOCATED IN: cytosol, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT2G21130.1); Has 16363 Blast hits to 16328 proteins in 2676 species: Archae - 108; Bacteria - 6734; Metazoa - 2930; Fungi - 1383; Plants - 1279; Viruses - 4; Other Eukaryotes - 3925 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR