F23948

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23948

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23948

Determination of introduced cDNA(s)

  • RAFL19-55-A05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL19-55-A05 - Resource: pda11273

    full reading [+] show sequence

    Nucleotide sequence: RAFL19-55-A05 - full reading 
    AGAAACCCTT GGAGTCTTGG ACTGCTCTGC GAGAGAACAT ATCAACCTTC 
    TACACTCTTC CAAAATCGCC ATCTTTATCT AAAGCTCCCC GAAATGTCAG 
    AACAGTATTC CGAAGATGCT AAACATATCG AGAAGCTTTA TGAGTTCGAC 
    GAGCGCTTGA GCGAGTCCAC GGACAAGTCT CAGAATGTTC AAGACTATGA 
    AGGGATTATT GAGTTGTCTA AGACGAACAT CAAGACAAAG CAGCTTGGAG 
    CTCAACTGAT TCCACGCTAC TTCAAGTTCT TCACAAGTCT CGCAACAGAA 
    GCTTTTGATG CGTACTTGGA TATATTCGAC GAAGTTGAAG TCGGGGTACG 
    AGTTCAAGCC ATCCGCGGGC TTCCATTGTT CTGCAAGGAT ACTCCTGATT 
    TTATATCTAA GATAATTGAT GTTCTTGTAC AATGTCTAAA TACTGAGGAA 
    TTTGTGGAGC GTGATGCTGT GCACAAGGCT CTTATGTCAT TATTTCGGCA 
    AGATACTAAG GCATCTTTGA CTGCATTGTT TAAGCACACT GAGGCCACTC 
    TTAGTACTGA TGAGCAAATC CGTGAAAAGG TCTTACACTT TATTAGAGAT 
    AAGGTGTTCC CTCTTAAAGG GGAACTGTTA AAGCCTCAAC AGGAAATGGA 
    AAGACATATA ACCGATTTAA TCAAAAAGAG CCTAGGGGAT GTAACTGGAG 
    AAGAGTTCAA TATGTTTATG GATTTCCTGA AAAGTTTGAG TATATTTGGA 
    GGGAAAGCTC CTCAAGAAAG AATGCAAGAA CTTGTAGAAA TTATTGAAGG 
    ACAGGCTGAT TTGGATTCAG AGTTTAATGT TTCAGATACA GATCATATTG 
    ACAGGTTTAT ATCATGCCTG CAAACGGCCC TTCCATTCTT TGCAAGAGGT 
    GCTCCAGGTA GCAAGTTTCT TAACTACTTG AACAAGAATA TCATGCCTGC 
    TTTTGACCAG CTGCCAGAGG AGAGGAAGCT TAATTTACTC AGAGCTCTTG 
    CTGAGATGTC CCCATACACA ACAGCTCAGG TAGCACGTCA GATACTTCCA 
    TCAATAGTTC AGCTCTTAAA GAAGTACATG CCTGCTAGGA AAACTGGGGA 
    AGAAATGAAC TTCACATATG TCGAGTGCCT GTTATACGTG CTACATCATT 
    TGGCGCACAA GGCTCCAAAT GCAACAAACA GCTTGTGCGG CTACAAGATA 
    GTGACTGGGC AGCCATCAGA TAGACTCGGG GAGGACTTCT CAGAGTTCAA 
    CAAGGAATTC ACTGAGAGAT TGACCAGTGT TGAGGATCTA ACGAAGGCAA 
    CAATGAAAAA ACTTACTCAA GGAATGTCTG AGCACAGCAA AGCCATGTCG 
    ACTGCTAAGA CAGATGAAGA GAAGTCAATC GTGAAAACGA AGAAGCAGAG 
    TACAACAACT GGACTCAGGA CCTGCAATAA CATATTGGCA ATGACAAAGG 
    GATTGCATGC AAAAGCGCCT TCATTTATCG GAAACACCAG TGTTACTCTT 
    TCTTGGAAAG AACCCACGAA AGTGACGAAA CCGTTAGCCT CTACAACGAC 
    TGGAGGAAAA CGGCCTGCAA ATGGAGCCGG TAATAACGTG GGTGCAAAAA 
    AGGCTCGTGT GCAGAATCAA CAACAGGTTG TGAACAAAAG ATCTGAGGGA 
    ATCTCACACG GTGGTGGTAG AGGCAGTCAC AGAGGCCGAG GCCGGGGCCA 
    AGGTCAGGGA AGACACAGTG GTGGTGGTGG CGGCCGTGGC CGTGGAAGAA 
    GAGGCTTCTG GTAATTTCAA AGGATTCTCC ATGACACTCT TTTTTGTCTG 
    TTCTTGTATA ACAGAGTATG TTTATCCTTC TTGTTTTGGC TCTTTTAGGC 
    TCCTAACATT CGACAAACAA ATTAATCTCT TTTGCGATTT CTTTGGCTTC 
    TCCTTTATAT GAC

    Gene models with high sequence identity

    1. AT1G29030.1 [+] show detail - Apoptosis inhibitory protein 5 (API5)
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Apoptosis inhibitory 5 1.7e-204
    HMMPanther APOPTOSIS INHIBITOR 5-RELATED 1.7e-204
    superfamily Armadillo-type fold 8.2e-16
    HMMPfam Apoptosis inhibitory 5 0

    See the detailed result >

    AT1G29030.1

    Model type
    Protein coding
    Short Description
    Apoptosis inhibitory protein 5 (API5)
    Computational Description
    Apoptosis inhibitory protein 5 (API5); FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Apoptosis inhibitory 5 (InterPro:IPR008383), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Apoptosis inhibitory protein 5 (API5) (TAIR:AT2G34040.1); Has 834 Blast hits to 647 proteins in 164 species: Archae - 2; Bacteria - 50; Metazoa - 244; Fungi - 88; Plants - 132; Viruses - 7; Other Eukaryotes - 311 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR