F24017

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24017

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24017

Determination of introduced cDNA(s)

  • RAFL11-05-H15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL11-05-H15 - Resource: pda12414

    full reading [+] show sequence

    Nucleotide sequence: RAFL11-05-H15 - full reading 
    GAGACAAACC AAAAAAAAGC CTAAAAAGCC GACCTTTTTT CTTTCTTTCT 
    CTCCTCTACC TCTCAGCTTC TGCTGGATCT CTCCAGCAGA CACGATCTTG 
    TTCGGAGAGA TTCGTAGGGG ACCGATCTAT CAAGGCTTCA AGGGCAAACA 
    GAAATGGACC ACGACAAGAC AGGATGCCAA AGCCCACCTG AAGGTCCCAA 
    GCTATGTACT AACAACTGCG GTTTCTTTGG AAGCGCTGCC ACAATGAACA 
    TGTGTTCTAA GTGTCACAAG GATATGTTGT TCCAACAGGA GCAGGGCACT 
    AAGTTTGCAT CTGCAGTGTC TGGAACATCG TCATCCAGCA ACATCATAAA 
    GGAAACCTTT ACCGCTGCGT TGGTCGATAT TGAAACCAAA TCCGTTGAGC 
    CGATGACTGT TTCTGTACAG CCATCCTCTG TCCAAGTCGT TGCAGAGGTA 
    GTAGCACCAG AAGAAGCTGC GAAACCAAAG GGACCAAGCC GATGTACTAC 
    TTGCAATAAG CGGGTTGGCC TGACTGGATT CAAATGTCGC TGTGGGAGCC 
    TCTTCTGCGG AACACACCGC TATGCAGACG TACATGACTG CTCCTTCAAT 
    TACCATGCTG CTGCGCAAGA GGCGATAGCT AAGGCAAACC CGGTTGTGAA 
    AGCAGAGAAG CTTGACAAAA TCTGAAAATC TAAGTAAACT TCTCTGGTTT 
    CATCAGGTGG CCTGGTGTTT CCTTCTCCTG TCTGTGTCTG GTTCAAGTAT 
    TCTCATGTTA AAAAGGTTTT ATATAAGGTC GAATGAAAGC GTGCTTGATC 
    TTTAGCGTCT TCCATCTCTC TGTGGTGTGG AACTTTCTAT TATCTGTGTT 
    TGCAAGCAGA GAAACGTGCT CTTAAAAAAA ATGCTTTGTG TGTTTATCTT 
    TCTACTATTT TTGAGCACTG TGTTATTGTT TCCTGTTTGG TCTGTATCAT 
    ATTGAGATTG TCTCTGTAGC TACATGAAGC TTATTTAAAA AGGCCTGTGT 
    TTGTCCTTCA ATCAGTGATT CCTTTCAATT TC

    Gene models with high sequence identity

    1. AT1G51200.1 [+] show detail - A20/AN1-like zinc finger family protein
      E-value: 0; Score: 99.90

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc finger, A20-type 0.000000000013
    HMMPfam Zinc finger, AN1-type 0.000000000078
    ProfileScan Zinc finger, A20-type 9.802
    ProfileScan Zinc finger, AN1-type 11.917
    HMMPanther PVPR3 PROTEIN 2.2e-96
    HMMPanther PRK1-ASSOCIATED ZINC FINGER PROTEIN 2.2e-96
    Gene3D Zinc finger, AN1-type 9.2e-26
    HMMSmart Zinc finger, A20-type 0.000000085
    HMMSmart Zinc finger, AN1-type 0.000000000000045

    See the detailed result >

    AT1G51200.1

    Model type
    Protein coding
    Short Description
    A20/AN1-like zinc finger family protein
    Computational Description
    A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT2G36320.1); Has 1055 Blast hits to 1034 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 447; Fungi - 9; Plants - 481; Viruses - 6; Other Eukaryotes - 112 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR