F24027

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24027

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24027

Determination of introduced cDNA(s)

  • RAFL02-01-K01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-01-K01 - Resource: pda00162

    full reading [+] show sequence

    Nucleotide sequence: RAFL02-01-K01 - full reading 
    GTGTGCTCTC CTCACTTCAC TCGTCCTTGA AACTTGAGCT TCAATTACAA 
    AGAATGGCTG CTTCAAGTGC TGTCACCGCA AACTACGTCC TCAAGCCACC 
    TCCATTCGCA CTGGATGCTT TGGAGCCGCA TATGAGCAAA CAAACTCTGG 
    AGTTTCACTG GGGAAAACAT CACAGAGCTT ACGTGGACAA CCTCAAGAAA 
    CAGGTTCTTG GAACCGAGCT TGAAGGCAAG CCCTTAGAGC ACATTATCCA 
    CAGCACTTAC AACAATGGTG ATCTCCTCCC TGCTTTCAAC AACGCTGCTC 
    AGGCGTGGAA CCACGAGTTC TTCTGGGAGT CAATGAAACC AGGTGGTGGA 
    GGAAAACCAT CAGGAGAGCT TCTTGCTTTG CTTGAAAGAG ATTTCACTTC 
    TTATGAGAAG TTCTATGAAG AGTTCAATGC TGCTGCAGCC ACTCAGTTTG 
    GAGCTGGCTG GGCCTGGCTT GCTTATTCAA ATGAAAAACT CAAAGTAGTG 
    AAAACTCCCA ATGCTGTGAA TCCCCTTGTG CTCGGCTCTT TCCCATTGCT 
    TACCATTGAT GTCTGGGAGC ATGCTTACTA CCTTGACTTC CAGAACCGAA 
    GACCAGATTA CATAAAGACA TTCATGACCA ATCTTGTGTC TTGGGAAGCT 
    GTAAGTGCCA GACTTGAGGC CGCCAAGGCT GCTTCTGCTT AAGCAAATTT 
    CTGAACAATT TGACTTCAGT GACAGTGAGT TCTGCATCAC CGAAGTCTCT 
    TATAAAATAT TGGTCGCTGT AATAAGGACA CAGCTCTCTT GTTGTGTATG 
    TGTCACAGAG TTCTTCATTT TGCTTGTGTA ATGAACAATT AAACATGCTC 
    TTTTCTGAGT GTGTGTGCGT TTTGTGTGTG TCAAGTTTTT CATCGTCTCC 
    TTTATTAAAC TCAAATTGGC ACCTACCATC AGTAATTCAT AGTTTGGCAT 
    GGCCCATT

    Gene models with high sequence identity

    1. AT4G25100.2 [+] show detail - Fe superoxide dismutase 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Manganese/iron superoxide dismutase, C-terminal 1.2e-38
    HMMPfam Manganese/iron superoxide dismutase, N-terminal 1.4e-26
    superfamily Manganese/iron superoxide dismutase, C-terminal 3.3e-42
    superfamily Manganese/iron superoxide dismutase, N-terminal 3e-34
    PatternScan Manganese/iron superoxide dismutase, binding site 0
    HMMPanther SUPEROXIDE DISMUTASE [FE] 1e-130
    HMMPanther Manganese/iron superoxide dismutase 1e-130
    HMMPIR Manganese/iron superoxide dismutase 2.3e-101
    FPrintScan Manganese/iron superoxide dismutase 2.8e-18
    FPrintScan Manganese/iron superoxide dismutase 2.8e-18
    FPrintScan Manganese/iron superoxide dismutase 2.8e-18
    FPrintScan Manganese/iron superoxide dismutase 2.8e-18
    FPrintScan Manganese/iron superoxide dismutase 2.8e-18

    See the detailed result >

    AT4G25100.2

    Model type
    Protein coding
    Short Description
    Fe superoxide dismutase 1
    Curator Summary
    Fe-superoxide dismutase
    Computational Description
    Fe superoxide dismutase 1 (FSD1); FUNCTIONS IN: superoxide dismutase activity, copper ion binding; INVOLVED IN: response to oxidative stress, response to cadmium ion, removal of superoxide radicals, response to copper ion, circadian rhythm; LOCATED IN: thylakoid, mitochondrion, plasma membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Manganese/iron superoxide dismutase, N-terminal (InterPro:IPR019831), Manganese/iron superoxide dismutase (InterPro:IPR001189), Manganese/iron superoxide dismutase, C-terminal (InterPro:IPR019832), Manganese/iron superoxide dismutase, binding site (InterPro:IPR019833); BEST Arabidopsis thaliana protein match is: Fe superoxide dismutase 2 (TAIR:AT5G51100.1); Has 11570 Blast hits to 11569 proteins in 3359 species: Archae - 194; Bacteria - 8166; Metazoa - 431; Fungi - 784; Plants - 398; Viruses - 1; Other Eukaryotes - 1596 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR