F24033

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24033

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24033

Determination of introduced cDNA(s)

  • RAFL06-87-I20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-87-I20 - Resource: pda07759

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-87-I20 - full reading 
    ACAAATCACA AATCACATCT CTTCATCTTC CTCGGTTTAT CCAAATCCTC 
    ATTCAGACTT CATCAAATCG TTTCTTGCTT CCGATCCGAA ATTTGCGGCG 
    GGAAAAGAAG ATAACATCAA CAAAAAAATG ATTTCTCTAT TCATCTCAAA 
    CTTTTCAAAC TTATCAAACT TATCTCCGAC CTTTGATAAC ATGAACATGA 
    ACATCCCATC GAAGAAGATC GTACCGGTAC CGACACCGAG TGAGAAAGTT 
    GTCTCTTTGG TATCTCGAAC CGGACGAGAT CTCCAACGTT ACAACACCGC 
    AGGGTATCGT CAAGTCGTCG GATGTGTACC ATATAGATAC AAGAAACACG 
    GAGGAGGAGA AATTGAAGTG CTTTTGATAA GTGCACAGAA GAAAGGGAAA 
    GGAATGTTAT TACCAAAAGG AGGTTGGGAG ATTGATGAAT CAATAGAAGA 
    AGCTGCTTTA AGAGAGACAA TTGAAGAAGC TGGTGTTACG GGTCAGCTTG 
    AAGAATCACT TGGGAAATGG CAATACAAAA GCAAAAGACA TACTATGATT 
    CATGATGGTC ATATGTTTCC TTTGCTTGTT AGTCAGCAGT TTGAGATATG 
    GCCTGAATCT GAATTCAGAC AACGCAAATG GGTTTCTTTG TCTGAAGCGA 
    TTGAGTTGTG TCAGAATTCG TGGATGAGAG AAGCTTTGGA AGCTTTCATT 
    AACCGGAAAT GCCAGACCCA ATAAGGATAA TGTAGCATCT CTGGGAACAA 
    AGAGCTCTTC ATTTGGAAGC AGATGCATAT AATTGAAGAG CAGGTCCTCA 
    AGTTTAGTGT TCTGATTTGA TTCATTCATT TGTTAATGAT GTTAGTAGAC 
    TAATTGATAA TAACTGATTG TTCTGAATGA TTGTCTTCAC AACATGTAAT 
    GTGTACATAT ATAAAATGGA TCAATCTCAT AGATGT

    Gene models with high sequence identity

    1. AT1G73540.1 [+] show detail - nudix hydrolase homolog 21
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D NUDIX hydrolase domain 1.4e-19
    superfamily NUDIX hydrolase domain-like 1.3e-26
    HMMPfam NUDIX hydrolase domain 2.9e-16
    PatternScan NUDIX hydrolase, conserved site 0
    HMMPanther DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROL 5.1e-26

    See the detailed result >

    AT1G73540.1

    Model type
    Protein coding
    Short Description
    nudix hydrolase homolog 21
    Computational Description
    nudix hydrolase homolog 21 (NUDT21); FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 4 (TAIR:AT1G18300.1); Has 1276 Blast hits to 1275 proteins in 388 species: Archae - 3; Bacteria - 524; Metazoa - 249; Fungi - 131; Plants - 237; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR