F24040

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24040

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24040

Determination of introduced cDNA(s)

  • RAFL08-11-G09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-11-G09 - Resource: pda17581

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-11-G09 - full reading 
    CGCCCAACCA AAACACAAGA GCCAAGAACA AAGAAACCAT GGATCATGAT 
    CACATGCATG GAATGCCTCG ACCATCATCA TCATCATCAT CATCACCATC 
    ATCCATGATG AACAATGGAT CCATGAACGA AGGAGGAGGA CATCACCACA 
    TGAAGATGAT GATGCACATG ACCTTCTTTT GGGGCAAGAA CACGGAGGTT 
    CTCTTCTCCG GTTGGCCCGG AACAAGCTCC GGCATGTATG CTCTTTGTCT 
    TATCTTTGTC TTCTTTCTCG CCGTCCTCAC CGAATGGCTT GCTCATTCCT 
    CTCTCCTCCG TGGCTCCACC GGAGATTCGG CTAATCGTGC CGCCGGGTTA 
    ATCCAAACCG CCGTGTATAC CCTCCGTATC GGCCTCGCCT ATCTAGTCAT 
    GCTCGCCGTC ATGTCGTTTA ACGCCGGTGT GTTTCTCGTC GCTCTGGCCG 
    GTCATGCCGT TGGTTTCATG TTGTTCGGAA GCCAAACTTT CCGGAATACC 
    TCCGATGACC GGAAAACTAA CTATGTTCCT CCCTCAGGTT GTGCTTGTTG 
    ATGATAATAT CAATGCTTTA TATATATGTA TGGATTGATC CATGCTTGTG 
    ATTCAAATTA AAGATCTAGG GTTTGTAGTT TTCTTGGTTA TTTTATGGAT 
    TGTTCTTGAG GTTCATGTGT GTGTGAATGT GAGGAGGAGG AATATTTGAT 
    GAAAAAAAAA AAAAAAAGAG CTCTTGGATC CACGGATCGT GGTAATGATT 
    ATCAGACCAA TGAACAACTC TTGCCACCAA TGGAAAATGT TACGAGAAAC 
    CCGTATCATA ACATTATGCA AGACACTGAA AGTTTGAGAT TTAATAATCA 
    GATTGGTGGT GGATCTCAAG GAATTTTCCC GCAGCCGAAA AGGGAAAATT 
    TTGGATATCC TCTTAGTAGT GTGGCGGGGA AGGAAATGAT TCAAGAAAGA 
    GAAGAAAAAG CTGAGAATTC TTCCATGTTT GATGCTTATA ATGGGAATGA 
    AGAGTTTGCT TCTCATGTTT ATGAAGAGGG ACCTGGAATC GATGGATTTC 
    AGATTATTGG AGATGCTATA CCTGGAGAAA AAGTTCTTGG TTGTGGGTTT 
    CCAGTGCGAG GAACCACTCT CTGTATGTTT CAGTGGGTTC GGCATCTTGA 
    AGATGGCACA AGACAATACA TCGAGGGAGC CACCCATCCA GAGTATATTG 
    TAACTGCGGA TGATGTAGAT AAACTGATTG CTGTTGAGTG TATTCCAATG 
    GATGATCAAG GTCGTCAGGG AGAATTAGTG AGATTGTTTG CTAATGATCA 
    AAACAAGATT AGATGTGATA CAGAGATGCA AACAGAAATC GACACTTATA 
    TATCCAGAGG TCAAGCAAGC TTTAATGTGC AGCTTCTGAT GGATTCATCA 
    GAGAGTTGGG AACCCGCAAC TGTTGTTTTG AAGAGATCTA GTTACCAGAT 
    TAAAACGAAT ACCACAGAAG CTGTAGTGAT CTCAGAGAAA TACTCAAAGG 
    AACTTCAGAT AAGAGTACCG TCTGGAGAAT CCACACAGTT TGTACTGATA 
    AGTTATGATG GATCTTCACA TCCCATAAGC ACACTCAATG TCCGTATGCG 
    TGATACGCTA GTCTTGACGA TGAGAATGCT TCAAAGCAAG GCACTGGACG 
    AGCGCAGAAA AGGACGAGTT TAAAAGTTAG TGATGACTAC ACACTACAGA 
    ACAGATCCAT CCTCGAGACC TTCAAATTTA AGTTTAATAA AATGGGGTCT 
    GCGATTTCTA TTTTTATAAT TGAGTAATAA TTGTTATCGC TATAGTTTTT 
    GTATTATTAT TTTTTGTCGT TTAGGTTCTA TGTTTTTCTG AACAACAAAA 
    ATAAATCTTA TTGTAATAGA CTGTAACATT CACTCTAAAA AAAAAA

    Gene models with high sequence identity

    1. AT3G03560.1 [+] show detail - unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther COPPER TRANSPORTER 3.2e-66
    HMMPanther Ctr copper transporter 3.2e-66
    HMMPfam Ctr copper transporter 4.3e-14
    HMMPfam Ctr copper transporter 1.3e-11

    See the detailed result >

    AT3G03560.1

    Model type
    Protein coding
    Computational Description
    unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23490.1); Has 157 Blast hits to 146 proteins in 38 species: Archae - 3; Bacteria - 14; Metazoa - 8; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR