F24046

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24046

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Other)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
  • decreased thickness (PATO:0000592)
    (Silique::Shape::thin)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)
T2  
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24046

Determination of introduced cDNA(s)

  • RAFL05-19-L05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-19-L05 - Resource: pdz87531

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-19-L05 - 5 prime EST
    GATCACTTTC TCTTGATCAC TCACTGCATC AACAATGGCC AGAGAGAAGA 
    TTGTGGTGGC CTGGTGGTAC CACAAAGAGC TGGAAACTAC TCTTGGGGCT
    GAGAATATTT GCATTCATGG CTACTTTAGC TGCAGCCATT GTAATGTCAC
    TAAACAAAGA GACAAAGACC TTGGTTGTGG CCACCATTGG TACTGTTCCT
    ATTAAAGCCA CTTTAACCGC TAAGTTTCAG CACACACCGG CTTTTGTGTT
    CTTTGTTATA GCTAATGTAA TGGTGAGCTT CCACAACTTG TTGATGATTG
    NGGTTCANAT TTTCAGCCGG AAACTGGAGT ACAAAGGTCT TCGTCTCCTC
    TCTATCGCCA TTCTTGACAT GCTAAACGCA ACACTAGTAT CTGCGGCTGC
    AAACGCGGCG GTGTTCGTGG CAGAGCTAGG GAAGAACGGA AACAAGCACG
    CCAAGTGGAA CAAAGTCTGC GACAGGTTCA CCACTTACTG TGATCACGGC
    GCANGAGCAA TCATCGCAGC ATTCGCCGGA GTCATTCTAA TGCTCCTCGT
    GTCCGCCGTC TCTATTT

    Gene models with high sequence identity

    1. AT4G20390.1 [+] show detail - Uncharacterised protein family (UPF0497)
      E-value: 0; Score: 99.29

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-19-L05 - 3 prime EST
    GAATTTTTTT TTGTCATTTT AGAATTATAT AAAAAGATAA GAGAGAAATG 
    AAAACTTGAA TACAAATGTG AAAGTGATAG AACAAAGGAG TGCATTACAC
    AATTTGCTAG TGACTTGAGA GACAAACACA CAAAGTAAGC CACAACATCT
    ATAAAATGGT CACACACATG TTGCTGAATT TTTGGCCACG ATGTTTTAGA
    CGACGGAGGT TGTGGTGGCG GTGGTGGGAG AAGTTTTTAG AATTGATTAA
    GAGGCGGGAA ATAGAGACGG CGGACACGAG GAGCATTAGA ATGACTCCGG
    CGAATGCTGC GATGATTGCT CCTGCGCCGT GATCACAGTA AGTGGTGAAC
    CTGTCGCAGA CTTTGTTCCA CTTGGCGTGC TTGTTTCCGT TCTTCCCTAG
    CTCTGCCACG AACACCGCCG CGTTTGCAGC CGCAGATACT AGTGTTGCGT
    TTAGCATGTC AAGAATGGCG ATAGAGAGGA GACGAAGACC TTTGTACTCC
    AGTTTCCGGC TGAAAATCTG AACCACAATC ATCAACAAGT TGTGGAAGCT
    CACCATTACA TTAGCTATAA CAAAGAACAC AAAAGCCGGT GTGTGCTGAA
    ACTTAGCGG

    Gene models with high sequence identity

    1. AT4G20390.1 [+] show detail - Uncharacterised protein family (UPF0497)
      E-value: 0; Score: 99.84

    AT4G20390.1

    Model type
    Protein coding
    Short Description
    Uncharacterised protein family (UPF0497)
    Computational Description
    Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT5G44550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR