F24109

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24109

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24109

Determination of introduced cDNA(s)

  • RAFL07-08-O14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-08-O14 - Resource: pdz87688

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL07-08-O14 - 5 prime EST 
    GACCAAATAC AAACCCTAGC CGCCTTATTC GTCTTCTTCG TTCTCTAGTT 
    TTTTCCTCAG TCTCTGTTCT TAGATCCCTT GTAGTTTCCA AATCTTCCGA 
    TAAAAATGTC GGGTAAAGGA GAAGGACCAG CTATCGGTAT CGATCTTGGT 
    ACCACTTACT CTTGCGTCGG AGTATGGCAA CACGACCGTG TTGAGATCAT 
    TGCTAATGAT CAAGGAAACA GAACCACGCC ATCTTACGTT GCTTTCACCG 
    ACTCCGAGAG GTTGATCGGT GACGCAGCTA AGAATCAGGT CGCCATGAAC 
    CCCGTTAACA CCGTTTTCGA CGCTAAGAGG TTGATCGGTC GTCGTTTCTC 
    TGACAGCTCT GTTCAGAGTG ACATGAAATT GTGGCCATTC AAGATTCAAG 
    CCGGACCTGC CGATAAGCCA ATGATCTACG TCGAATACAA GGGTGAAGAG 
    AAAGAGTTCG CAGCTGAGGA GATTTCTTCC ATGGTTCTTA TTAAGATGCG 
    TGAGATTGCT GAGGCTTACC TTGGTGTCAC AATCAAGAAC GCCGTTGTTA 
    CCGTTCCAGC TTACTTCAAC GACTCTCAGC GTCAGGCTAC AAAGGATGCT 
    GGTGTCATCG CTGGTTTG

    Gene models with high sequence identity

    1. AT5G02500.2 [+] show detail - heat shock cognate protein 70-1
      E-value: 0; Score: 100.00

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL07-08-O14 - 3 prime EST 
    AGAAAACAAA TTTGATTAAA AACACATACA ACAATGTTAA CCAGATCTGG 
    CAAACTCTAA AAAGCTTCAA CTTTTAACGA ACTTATTATA AACCTGTTTC 
    AGTTTTTTTT TTTCCTTTTT TTTTTGGGAA TCTCCTTGGG ACTTTGGTCT 
    GGTTTCTAAC AATACAGTGA TGATTGTATT CAAATTGAAA ATTTGGTAAG 
    GGAAACAAAT AAGGAAGAAG AAGAAGAAGC ATAAAGGTTG GAGCGTGGGA 
    CCTTCAATGG TGTCTTTTGA CTTGTAAGCT AAAACCCATC AACAAGAATC 
    TGGAGGGTCT TCAAATGGAT AGTCGTAGTA TTATGAATGT GTGTTCTTTT 
    AGCAACCCAT CACTGCACAA TTGTATACGA AAGTAGGAGA ATGTTTCCTG 
    TCAAGTAGTG TCCACTGAGG TGGAC

    Gene models with high sequence identity

    1. AT2G02870.3 [+] show detail - Galactose oxidase/kelch repeat superfamily protein
      E-value: 0; Score: 99.06

    AT2G02870.3

    Model type
    Protein coding
    Short Description
    Galactose oxidase/kelch repeat superfamily protein
    Computational Description
    Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G14330.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

    AT5G02500.2

    Model type
    Protein coding
    Short Description
    heat shock cognate protein 70-1
    Curator Summary
    encodes a member of heat shock protein 70 family.
    Computational Description
    heat shock cognate protein 70-1 (HSC70-1); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cold, response to virus, response to heat; LOCATED IN: cytosol, apoplast, chloroplast, plasma membrane, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: Heat shock protein 70 (Hsp 70) family protein (TAIR:AT5G02490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR