F24119

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24119

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24119

Determination of introduced cDNA(s)

  • RAFL09-41-F04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-41-F04 - Resource: pda08329

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-41-F04 - full reading
    ATTAATCCAC TGAAACAATC ACTATTCATT CTCTTTCCTT AAGTGTCAAA 
    CTCTTGAAAA AACTACTTTG AAGGAAAAAA TGTCTAAGAA GAAGAAAGGC
    AGCAACAACT TTAAGCTTCT CTGTTTCTTC CTGTTTTTGG GTGGTTTGGT
    TCAGACAGAT GCTTCTTTTG GAGTAGGAGG CGGCGTTGGA GTAGGAATCG
    GCGGCGGCGG CGGTGGCGGT GGCGGTGGTG TTTGGGTTGG CGGTGGATAC
    AACAACGGTG GAAATCGTAA TGCTGTTCCA GGATCATCAG CTCCAAACAG
    GGTAGCTTAC AATGCTCTTC AAGTTTGGAA ATCAGCCATG AGAGAGGATC
    CATCAAATGT TCTCAAAACA TGGGTTGGAT CAGATGTTTG TTCTTACAAA
    GGTGTGTTCT GTTCTGGTCA ATCTATAACC TCTATAGATC TTAACCATGC
    AAATCTCAAA GGCACACTTG TCAAAGACCT AGCTTTACTC TCAGACCTCA
    ATATTCTCCA TCTCAACAGT AACAGATTCT CAGGGCAAAT CCCAGATTCT
    TTCAAATCTT TAGCTTCTCT TCAAGAACTT GATCTAAGCA ACAATAAACT
    CTCAGGTCCT TTCCCTTTAG TCACACTCTA CATACCAAAT CTGGTTTACC
    TCGATCTCCG GTTTAATAGT TTAACCGGTT TCATCCCTGA AGAGCTTTTC
    AACAAACGGT TAGACGCGAT TCTCCTCAAT AACAATCAAT TCGTCGGAGA
    AATCCCAAGA AACCTCGGAA ATTCTCCGGC TTCGGTTATT AATCTCGCGA
    ATAACAGATT TTCCGGCGAA ATTCCGACGA GTTTTGGTCT GACGGGATCG
    AGGGTTAAGG AAGTTTTGCT TTTGAATAAC CAGTTAACCG GTTGTATACC
    GGAATCTGTT GGTATGTTCT CTGAAATTGA AGTCTTTGAC GTTAGCTACA
    ATGCATTGAT GGGTCATGTT CCAGATACGA TCTCTTGCTT GTCGGCGATT
    GAAATTTTGA ATCTTGCTCA CAATAAATTC TCTGGGGAGG TTCCTGATTT
    GGTTTGTTCG TTGAGGAATC TTATTAATCT CACTGTTGCG TTCAATTTCT
    TCTCTGGGTT TAGCTCTGAA TGTTCTTCCA GGGTTAGTTT CGGGTTTGAT
    TTCGTTGGGA ATTGTATTCC CGGGAGGAAT TCGCAGCGGC CGCAGCCGGA
    TTGTTCCGGT TATTCCGGCG GAGCTATGAG CTGTTTTAGG ATTCCGACGC
    AGCCTTTGGC TTGTGCTGCG ATAAGTGTTG GATTGAGAGA GAGTAATAAT
    CAATACTACA CTTCATCTCC TCCATGAAAG TTTCTAAAGT TAGAAGCTTT
    TTTTTATTAA TGGTTGATGC TGAATGATCT ATCTTTTTTG TAACTTATTA
    ATTAGTTGAT TAGTGACCAA ATTAAACGTT AATTCCTCTT CTGTGTAATC
    CAATCGTTGC TAATGTTGTT TTGTAAGCAG AAGAATTTTG TAAAAATCTA
    ACGTTAAAAA AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT4G29240.1 [+] show detail - Leucine-rich repeat (LRR) family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily L domain-like 4.9e-54
    HMMPanther LRR RECEPTOR-LIKE KINASE 5.6e-48
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 5.6e-48
    HMMPfam Leucine-rich repeat 0.36
    HMMPfam Leucine-rich repeat 0.067
    HMMPfam Leucine-rich repeat 0.052
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 6.8e-07
    Gene3D no description 8.9e-54

    See the detailed result >

    AT4G29240.1

    Model type
    Protein coding
    Short Description
    Leucine-rich repeat (LRR) family protein
    Computational Description
    Leucine-rich repeat (LRR) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT2G19780.1); Has 63461 Blast hits to 20951 proteins in 903 species: Archae - 14; Bacteria - 2781; Metazoa - 8815; Fungi - 480; Plants - 47912; Viruses - 34; Other Eukaryotes - 3425 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR